View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16328_low_10 (Length: 211)
Name: NF16328_low_10
Description: NF16328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16328_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 139; Significance: 6e-73; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 50 - 208
Target Start/End: Original strand, 7308178 - 7308336
Alignment:
| Q |
50 |
ataactgaaatcaagcaatcaatctaatttatcagatattttcttggtggtgggtttccagaaaccgagctacaaaaccgtatagtaattctcggtgaga |
149 |
Q |
| |
|
|||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7308178 |
ataactgaaatcaagcaaacatccttatttatcagatattttcttggtggtgggtttccagaaaccgagctacaaaaccgtatagtaattctcggtgaga |
7308277 |
T |
|
| Q |
150 |
gaataacagaacaagcagaccaatccattgcgggaaccaacattcttacgacacttcat |
208 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7308278 |
gaataacaaaacaagcagaccaatccattgcgggaaccaacattcttacgacacttcat |
7308336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 191
Target Start/End: Complemental strand, 20414358 - 20414313
Alignment:
| Q |
146 |
gagagaataacagaacaagcagaccaatccattgcgggaaccaaca |
191 |
Q |
| |
|
||||||||||| || |||||||||||||||||||| |||||||||| |
|
|
| T |
20414358 |
gagagaataaccgagcaagcagaccaatccattgcaggaaccaaca |
20414313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 191
Target Start/End: Original strand, 13888635 - 13888678
Alignment:
| Q |
148 |
gagaataacagaacaagcagaccaatccattgcgggaaccaaca |
191 |
Q |
| |
|
||||||||| || |||||||||||||||||||| |||||||||| |
|
|
| T |
13888635 |
gagaataaccgagcaagcagaccaatccattgcaggaaccaaca |
13888678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University