View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16328_low_3 (Length: 309)
Name: NF16328_low_3
Description: NF16328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16328_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 9 - 302
Target Start/End: Complemental strand, 25695843 - 25695549
Alignment:
| Q |
9 |
gagaagaaagagagagcaatgacacaaggtaagagataagtaggggtacgaggagtgtgtttagaagaatgtgccattgtagaagaagaaaaatcagaaa |
108 |
Q |
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| T |
25695843 |
gagaagaaagagagagcaatgacacaaggtaagagataagtaggggtacgaggagtgtgtttagaagaatgtgccattgtagaagaagaaaaatcagaaa |
25695744 |
T |
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| Q |
109 |
caatgaagaaagtgtcttttgagtttggtaacacattttgttatgttactaaatgttgttgtaaaagattgagaagaagtggtggtagagtcatgattta |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25695743 |
caatgaagaaagtgtcttttgagtttggtaacacattttgttatgttactaaatgttgttgtaaaagattgagaagaagtggtggtagagtcatgattta |
25695644 |
T |
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| Q |
209 |
gaaacataaggacactcatttcacatgatggtggagaccacgtgtgtgaaaaatgctgtg-aaagttgagattgaggttattattatgatgatgt |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
25695643 |
gaaacataaggacactcatttcacatgatggtggagaccacgtgtgtgaaaaatgctgtgaaaagttgagattgaggttattatgatgatgatgt |
25695549 |
T |
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