View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16328_low_7 (Length: 245)

Name: NF16328_low_7
Description: NF16328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16328_low_7
NF16328_low_7
[»] scaffold0010 (1 HSPs)
scaffold0010 (8-237)||(143102-143331)
[»] chr7 (2 HSPs)
chr7 (9-237)||(16067944-16068172)
chr7 (123-222)||(9692989-9693088)
[»] scaffold0408 (1 HSPs)
scaffold0408 (16-237)||(14984-15205)
[»] chr6 (3 HSPs)
chr6 (16-237)||(14746549-14746770)
chr6 (8-180)||(22395344-22395516)
chr6 (123-237)||(19545145-19545254)
[»] chr5 (6 HSPs)
chr5 (8-237)||(25791827-25792056)
chr5 (8-175)||(25756188-25756355)
chr5 (8-138)||(19020257-19020386)
chr5 (123-211)||(32948837-32948924)
chr5 (169-222)||(14137964-14138017)
chr5 (169-222)||(23909181-23909234)
[»] scaffold1043 (1 HSPs)
scaffold1043 (9-237)||(402-631)
[»] scaffold0061 (2 HSPs)
scaffold0061 (8-138)||(16550-16680)
scaffold0061 (8-138)||(25608-25738)
[»] chr4 (10 HSPs)
chr4 (8-237)||(17419480-17419705)
chr4 (124-237)||(19727534-19727647)
chr4 (114-237)||(12230807-12230930)
chr4 (8-89)||(19727457-19727538)
chr4 (123-237)||(13268018-13268132)
chr4 (123-237)||(18554721-18554830)
chr4 (123-222)||(13559366-13559465)
chr4 (123-237)||(15870947-15871061)
chr4 (123-190)||(15888522-15888589)
chr4 (185-221)||(13235248-13235284)
[»] chr2 (4 HSPs)
chr2 (123-237)||(29718097-29718211)
chr2 (124-199)||(18985275-18985350)
chr2 (123-218)||(26861212-26861307)
chr2 (8-87)||(22521725-22521805)
[»] chr3 (7 HSPs)
chr3 (123-237)||(21977104-21977218)
chr3 (123-237)||(21999535-21999649)
chr3 (123-237)||(19186781-19186895)
chr3 (127-211)||(10302744-10302828)
chr3 (123-235)||(22161732-22161844)
chr3 (123-222)||(10341070-10341169)
chr3 (128-190)||(16357825-16357886)
[»] scaffold0364 (1 HSPs)
scaffold0364 (123-211)||(14588-14676)
[»] scaffold0290 (1 HSPs)
scaffold0290 (126-222)||(11838-11934)
[»] scaffold0118 (1 HSPs)
scaffold0118 (133-237)||(11955-12059)
[»] scaffold0385 (1 HSPs)
scaffold0385 (123-237)||(16144-16258)
[»] chr8 (3 HSPs)
chr8 (123-237)||(10454072-10454186)
chr8 (177-234)||(17861384-17861441)
chr8 (185-237)||(1683229-1683281)
[»] chr1 (1 HSPs)
chr1 (123-237)||(21496562-21496675)
[»] scaffold0207 (1 HSPs)
scaffold0207 (123-211)||(739-827)


Alignment Details
Target: scaffold0010 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 143331 - 143102
Alignment:
Q  8 tgagatgaataagcattgatgttattctttagatgacatgtagtgattgttccagcttacgatgtagatgacgctcttaaggagtatcttaggccaacga 107  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  143331 tgagatgaataagcattgatgtcattctttagatgacaagtagtgattgttccagcttacgttgtagatgacgctcttaaggagtatcttaggccaacga 143232  T
Q  108 gtggatagattagatgtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttat 207  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||  ||| |||||||||||||||||||||||||||||||||||    
T  143231 gtggatagattagatgtaagggggtgaatcttttcactttatggtatcttaatctatgatgggaaggttgtcttaaattttaaaatgttgttactgttat 143132  T
Q  208 gatgtgaattttgattatagaatgatgatg 237  Q
    ||||||||||||||| | ||| ||||||||    
T  143131 gatgtgaattttgatgagagattgatgatg 143102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 9 - 237
Target Start/End: Original strand, 16067944 - 16068172
Alignment:
Q  9 gagatgaataagcattgatgttattctttagatgacatgtagtgattgttccagcttacgatgtagatgacgctcttaaggagtatcttaggccaacgag 108  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||  ||||||||||| ||||||||||||||||||||||||| ||    
T  16067944 gagatgaataagcattgatgttattctttagatgacaagtagtgactgttccaacttattatgtagatgacactcttaaggagtatcttaggccaacaag 16068043  T
Q  109 tggatagattagatgtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatg 208  Q
     ||||| |||||||||||||||| ||||||||||| |||| |||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||    
T  16068044 gggataaattagatgtaagggggagaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatg 16068143  T
Q  209 atgtgaattttgattatagaatgatgatg 237  Q
    |||||||||||||| | | ||||||||||    
T  16068144 atgtgaattttgatgagaaaatgatgatg 16068172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 9692989 - 9693088
Alignment:
Q  123 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat 222  Q
    |||||| || ||||||||||||||||  ||||||||||||| ||  |||||||||||||||||||||| | ||||||  |||||||||| ||| ||||||    
T  9692989 gtaaggaggagaatctttgcactttagagtatcttaatctatgatgggagggttgtcttaaattttaataagttgttgatgttatgatgagaagtttgat 9693088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 15205 - 14984
Alignment:
Q  16 ataagcattgatgttattctttagatgacatgtagtgattgttccagcttacgatgtagatgacgctcttaaggagtatcttaggccaacgagtggatag 115  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||| | || ||||||| |||||||||||||||||||||||||||| ||||||    
T  15205 ataagcattgatgttattctttagatgacaagtagtgatggttccagcttatgttgaagatgacactcttaaggagtatcttaggccaacgaggggatag 15106  T
Q  116 attagatgtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaa 215  Q
    |||||||||||||||| ||||||||||||| || |||||||||||||| ||   || ||||| |||||||||||||||||||||||||||||||||||||    
T  15105 attagatgtaagggggagaatctttgcactatagggtatcttaatctatgaggagaaggttgacttaaattttaaaatgttgttactgttatgatgtgaa 15006  T
Q  216 ttttgattatagaatgatgatg 237  Q
    |||| || | ||||||||||||    
T  15005 tttttatgagagaatgatgatg 14984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 146; Significance: 5e-77; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 14746770 - 14746549
Alignment:
Q  16 ataagcattgatgttattctttagatgacatgtagtgattgttccagcttacgatgtagatgacgctcttaaggagtatcttaggccaacgagtggatag 115  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||| | || ||||||| |||||||||||||||||||||||||||| ||||||    
T  14746770 ataagcattgatgttattctttagatgacaagtagtgatggttccagcttatgttgaagatgacactcttaaggagtatcttaggccaacgaggggatag 14746671  T
Q  116 attagatgtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaa 215  Q
    |||||||||||||||| ||||||||||||| || |||||||||||||| ||   || ||||| |||||||||||||||||||||||||||||||||||||    
T  14746670 attagatgtaagggggagaatctttgcactatagggtatcttaatctatgaggagaaggttgacttaaattttaaaatgttgttactgttatgatgtgaa 14746571  T
Q  216 ttttgattatagaatgatgatg 237  Q
    |||| || | ||||||||||||    
T  14746570 tttttatgagagaatgatgatg 14746549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 8 - 180
Target Start/End: Original strand, 22395344 - 22395516
Alignment:
Q  8 tgagatgaataagcattgatgttattctttagatgacatgtagtgattgttccagcttacgatgtagatgacgctcttaaggagtatcttaggccaacga 107  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||| | |||||||| ||||| |||||| ||||||||||||| ||    
T  22395344 tgaggtgaataagcattgatgttattctttagatgacaagtagtgatggttccagcttatgttgtagatgccgctcataaggaatatcttaggccaatga 22395443  T
Q  108 gtggatagattagatgtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtct 180  Q
    | ||||| ||| |||||||||||| || ||||||||||||| ||||||||||| || ||  ||||||||||||    
T  22395444 ggggataaattggatgtaagggggagagtctttgcactttagggtatcttaatatatgatgggagggttgtct 22395516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 123 - 237
Target Start/End: Original strand, 19545145 - 19545254
Alignment:
Q  123 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat 222  Q
    ||||||||| |||||||||||||||| |||||||||||||| || | ||||||||||     |||||| |||||||| ||||||| ||||||||||||||    
T  19545145 gtaagggggagaatctttgcactttagggtatcttaatctatgatatgagggttgtc-----ttttaatatgttgttgctgttataatgtgaattttgat 19545239  T
Q  223 tatagaatgatgatg 237  Q
     | | ||||||||||    
T  19545240 gagaaaatgatgatg 19545254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 25792056 - 25791827
Alignment:
Q  8 tgagatgaataagcattgatgttattctttagatgacatgtagtgattgttccagcttacgatgtagatgacgctcttaaggagtatcttaggccaacga 107  Q
    |||||| ||||||||||||| ||||||||||||||||| |||||| | |||| ||||||   ||||||||||||||||||||||||||||||| ||||||    
T  25792056 tgagattaataagcattgattttattctttagatgacaagtagtggtggttcgagcttatactgtagatgacgctcttaaggagtatcttaggtcaacga 25791957  T
Q  108 gtggatagattagatgtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttat 207  Q
    | ||| | |||||||||||| ||| ||||||||| |||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  25791956 ggggacaaattagatgtaagagggagaatctttgaactttagggtatcttaatctatgacaggagggttttcttaaattttaaaatgttgttactgttat 25791857  T
Q  208 gatgtgaattttgattatagaatgatgatg 237  Q
    |||||||| |||||| | ||||||||||||    
T  25791856 gatgtgaactttgatgagagaatgatgatg 25791827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 25756188 - 25756355
Alignment:
Q  8 tgagatgaataagcattgatgttattctttagatgacatgtagtgattgttccagcttacgatgtagatgacgctcttaaggagtatcttaggccaacga 107  Q
    |||||||||||||||||||| ||||||||||||||||| |||||| | |||| ||||||   ||||||||||||||||||||||||||||||| ||||||    
T  25756188 tgagatgaataagcattgattttattctttagatgacaagtagtggtggttcgagcttatactgtagatgacgctcttaaggagtatcttaggtcaacga 25756287  T
Q  108 gtggatagattagatgtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggt 175  Q
    | ||| | |||||||||||| ||| |||||||||||||||| |||||||||||||| |||||||||||    
T  25756288 ggggacatattagatgtaagagggagaatctttgcactttagggtatcttaatctatgacaggagggt 25756355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 19020386 - 19020257
Alignment:
Q  8 tgagatgaataagcattgatgttattctttagatgac-atgtagtgattgttccagcttacgatgtagatgacgctcttaaggagtatcttaggccaacg 106  Q
    |||||||||||||||||||||||||| |||||||||| | |||||||| |||||| |||  | ||| |||| |||||||||||||||||||||||||| |    
T  19020386 tgagatgaataagcattgatgttattatttagatgacaaagtagtgatggttccaacttgggttgttgatggcgctcttaaggagtatcttaggccaatg 19020287  T
Q  107 agtggatagattagatgtaagggggtgaatct 138  Q
    |  ||| |||||||||||||||||| ||||||    
T  19020286 a--ggagagattagatgtaagggggagaatct 19020257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 211
Target Start/End: Complemental strand, 32948924 - 32948837
Alignment:
Q  123 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatg 211  Q
    ||||||||| ||||||||||||||||  |||||| |||||  ||  ||||||||||||| |||||||| |||||||| |||||||||||    
T  32948924 gtaagggggagaatctttgcactttagagtatctaaatctt-gatgggagggttgtctttaattttaatatgttgttgctgttatgatg 32948837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 14138017 - 14137964
Alignment:
Q  169 ggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat 222  Q
    ||||||||||||||||| |||| ||||||||  ||||||| |||||||||||||    
T  14138017 ggagggttgtcttaaatcttaatatgttgttgttgttatgctgtgaattttgat 14137964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 23909234 - 23909181
Alignment:
Q  169 ggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat 222  Q
    |||||||||||||||||||||| | ||||||  |||||||||| ||||||||||    
T  23909234 ggagggttgtcttaaattttaataagttgttgttgttatgatgagaattttgat 23909181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 9 - 237
Target Start/End: Original strand, 402 - 631
Alignment:
Q  9 gagatgaataagcattgatgttattctttagatgacatgtagtgattgttccagcttacgatgtagatgacgctcttaaggagtatcttaggccaacgag 108  Q
    |||||| |||||||||||||||||||||||||||||| |||| |||  |||||||||| | |||||||||| ||||||||||||||||||||||||||||    
T  402 gagatggataagcattgatgttattctttagatgacaagtagggatgattccagcttatgttgtagatgacactcttaaggagtatcttaggccaacgag 501  T
Q  109 tggatagattagatgtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaa-ttttaaaatgttgttactgttat 207  Q
     |||||||||||||||||||||| ||||||||||| | ||  ||||||||||||| ||   ||||||||||||||| |||||||||||||||||||||||    
T  502 gggatagattagatgtaagggggagaatctttgcaatgtagagtatcttaatctatgatgagagggttgtcttaaatttttaaaatgttgttactgttat 601  T
Q  208 gatgtgaattttgattatagaatgatgatg 237  Q
    ||| |||||||| || | ||||||||||||    
T  602 gatatgaatttttatgagagaatgatgatg 631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 16550 - 16680
Alignment:
Q  8 tgagatgaataagcattgatgttattctttagatgacatgtagtgattgttccagcttacgatgtagatgacgctcttaaggagtatcttaggccaacga 107  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16550 tgagatgaataagcattgatgttattctttagatgacaagtagtgattgttccagcttacgttgtagatgacgctcttaaggagtatcttaggccaacga 16649  T
Q  108 gtggatagattagatgtaagggggtgaatct 138  Q
    |||||||||||||||||||||||| ||||||    
T  16650 gtggatagattagatgtaagggggagaatct 16680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 25608 - 25738
Alignment:
Q  8 tgagatgaataagcattgatgttattctttagatgacatgtagtgattgttccagcttacgatgtagatgacgctcttaaggagtatcttaggccaacga 107  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  25608 tgagatgaataagcattgatgttattctttagatgacaagtagtgattgttccagcttacgttgtagatgacgctcttaaggagtatcttaggccaacga 25707  T
Q  108 gtggatagattagatgtaagggggtgaatct 138  Q
    |||||||||||||||||||||||| ||||||    
T  25708 gtggatagattagatgtaagggggagaatct 25738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 17419705 - 17419480
Alignment:
Q  8 tgagatgaataagcattgatgttattctttagatgacatg-tagtgattgttccagcttacgatgtagatgacgctcttaaggagtatcttaggccaacg 106  Q
    ||||||||||||||||||||||||||||||| |||||| | ||||||| ||||||| ||| | ||||||||   ||||||||||||||||||||||||||    
T  17419705 tgagatgaataagcattgatgttattctttatatgacaaggtagtgatggttccagtttatgttgtagatggtactcttaaggagtatcttaggccaacg 17419606  T
Q  107 agtggatagattagatgtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgtta 206  Q
    |||||||||||     ||||||||  |||||||||||||||| |||||||||||||| ||  | ||  |||| ||||||||||||||||||||||| |||    
T  17419605 agtggatagat-----gtaaggggaagaatctttgcactttagggtatcttaatctatgaaggaagatttgttttaaattttaaaatgttgttactatta 17419511  T
Q  207 tgatgtgaattttgattatagaatgatgatg 237  Q
    |||||||||||||||| | ||||||||||||    
T  17419510 tgatgtgaattttgatgagagaatgatgatg 17419480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 124 - 237
Target Start/End: Original strand, 19727534 - 19727647
Alignment:
Q  124 taagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgatt 223  Q
    ||||| || |||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  19727534 taaggcggagaatctttgcactttagggtatcttaatctatgacgggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgacg 19727633  T
Q  224 atagaatgatgatg 237  Q
    | ||||||||||||    
T  19727634 agagaatgatgatg 19727647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 114 - 237
Target Start/End: Complemental strand, 12230930 - 12230807
Alignment:
Q  114 agattagatgtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtg 213  Q
    ||||| || |||||||||  ||||||||||||||| ||||||||||||||  |  |||||||||||||||||||||| |||||||| || ||||||||||    
T  12230930 agattcgaggtaagggggataatctttgcactttagggtatcttaatctattatgggagggttgtcttaaattttaatatgttgttgctattatgatgtg 12230831  T
Q  214 aattttgattatagaatgatgatg 237  Q
    ||||||||| | ||||||||||||    
T  12230830 aattttgatgagagaatgatgatg 12230807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 19727457 - 19727538
Alignment:
Q  8 tgagatgaataagcattgatgttattctttagatgacatgtagtgattgttccagcttacgatgtagatgacgctcttaagg 89  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||| | |||||||||| |||||||||    
T  19727457 tgagatgaataagcattgatgttattctttagatgacaagtagtgactgttccaacttatgttgtagatgacactcttaagg 19727538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 123 - 237
Target Start/End: Complemental strand, 13268132 - 13268018
Alignment:
Q  123 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat 222  Q
    ||||||||| |||||||||||||||| ||||||||||| || ||  |||||||| ||||||||||||| |  |||||  ||||||||||||||||||||     
T  13268132 gtaagggggagaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaattttaatacattgttgttgttatgatgtgaattttgac 13268033  T
Q  223 tatagaatgatgatg 237  Q
     | ||||||||||||    
T  13268032 gagagaatgatgatg 13268018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 123 - 237
Target Start/End: Original strand, 18554721 - 18554830
Alignment:
Q  123 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat 222  Q
    ||||||||| |||||||||||||||| |||||||||||||| || | ||||||||||     |||||| |||||||| ||||||||||||||||||||||    
T  18554721 gtaagggggagaatctttgcactttagggtatcttaatctatgatatgagggttgtc-----ttttaatatgttgttgctgttatgatgtgaattttgat 18554815  T
Q  223 tatagaatgatgatg 237  Q
     | | ||||||||||    
T  18554816 gagaaaatgatgatg 18554830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 13559366 - 13559465
Alignment:
Q  123 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat 222  Q
    |||||| || ||||||||||||||||  ||||||||||||| ||  |||||||||||||||||||||| | ||||||  |||||||||| ||| ||||||    
T  13559366 gtaaggaggagaatctttgcactttagagtatcttaatctatgatgggagggttgtcttaaattttaataagttgttgatgttatgatgagaagtttgat 13559465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 123 - 237
Target Start/End: Original strand, 15870947 - 15871061
Alignment:
Q  123 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat 222  Q
    ||||||||| |||||||||||||||| ||||||||||| || ||  ||||||||||||||||||||||     | || |||||||||||| |||||||||    
T  15870947 gtaagggggagaatctttgcactttagggtatcttaatttatgatgggagggttgtcttaaattttaatgcactttttctgttatgatgtaaattttgat 15871046  T
Q  223 tatagaatgatgatg 237  Q
     |  |||||||||||    
T  15871047 gagtgaatgatgatg 15871061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 15888522 - 15888589
Alignment:
Q  123 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaa 190  Q
    ||||| ||| |||||||||||||||| | ||||| ||| || ||  ||||||||||||||||||||||    
T  15888522 gtaagagggagaatctttgcactttaggatatctaaatttatgatgggagggttgtcttaaattttaa 15888589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 13235284 - 13235248
Alignment:
Q  185 ttttaaaatgttgttactgttatgatgtgaattttga 221  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  13235284 ttttaatatgttgttagtgttatgatgtgaattttga 13235248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 123 - 237
Target Start/End: Original strand, 29718097 - 29718211
Alignment:
Q  123 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat 222  Q
    ||||||||| |||| |||||||||||  ||||||||||||| ||  | |||||||||||||||||||| ||||||||  |||||||||||||||||||||    
T  29718097 gtaagggggagaatatttgcactttagagtatcttaatctatgatggaagggttgtcttaaattttaatatgttgttgttgttatgatgtgaattttgat 29718196  T
Q  223 tatagaatgatgatg 237  Q
     | ||||||||||||    
T  29718197 gagagaatgatgatg 29718211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 199
Target Start/End: Original strand, 18985275 - 18985350
Alignment:
Q  124 taagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgtt 199  Q
    |||||||| |||||||||||| ||| |||||| ||||||| || ||||||||||| ||||||||||| ||||||||    
T  18985275 taagggggagaatctttgcacattagggtatcgtaatctatgataggagggttgtattaaattttaatatgttgtt 18985350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 26861212 - 26861307
Alignment:
Q  123 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattt 218  Q
    ||||||||| || ||||||||||||| |||||||||||| | ||  | |||||||| ||||||||||| || || || |||||||| ||| |||||    
T  26861212 gtaagggggagattctttgcactttagggtatcttaatccatgatggaagggttgtattaaattttaatatattattgctgttatggtgttaattt 26861307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 22521805 - 22521725
Alignment:
Q  8 tgagatgaataagcattgatgttattctttagatgac-atgtagtgattgttccagcttacgatgtagatgacgctcttaa 87  Q
    |||||||||||| ||||||||||||| |||||||||| | |||||||| ||| || |||  | |||||||| |||||||||    
T  22521805 tgagatgaataaccattgatgttattttttagatgacaaagtagtgatggttacaacttgtgttgtagatggcgctcttaa 22521725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 123 - 237
Target Start/End: Complemental strand, 21977218 - 21977104
Alignment:
Q  123 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat 222  Q
    ||||||||  |||||||||||||||| ||||||||||| || ||  | |||||||||||||||||||| |  ||||| ||||||||||||||||||||||    
T  21977218 gtaaggggtagaatctttgcactttagggtatcttaatttatgatggaagggttgtcttaaattttaatacattgttgctgttatgatgtgaattttgat 21977119  T
Q  223 tatagaatgatgatg 237  Q
     |  |||||||||||    
T  21977118 gagtgaatgatgatg 21977104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 123 - 237
Target Start/End: Complemental strand, 21999649 - 21999535
Alignment:
Q  123 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat 222  Q
    ||||||||  |||||||||||||||| ||||||||||| || ||  | |||||||||||||||||||| |  ||||| ||||||||||||||||||||||    
T  21999649 gtaaggggtagaatctttgcactttagggtatcttaatttatgatggaagggttgtcttaaattttaatacattgttgctgttatgatgtgaattttgat 21999550  T
Q  223 tatagaatgatgatg 237  Q
     |  |||||||||||    
T  21999549 gagtgaatgatgatg 21999535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 123 - 237
Target Start/End: Complemental strand, 19186895 - 19186781
Alignment:
Q  123 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat 222  Q
    |||||| || |||||||||||||||| ||||||||||| || ||  || |||| |||||||||||||| |  ||||| ||||||||||||||||||||||    
T  19186895 gtaaggaggagaatctttgcactttagggtatcttaatttatgatgggtgggtcgtcttaaattttaatacattgttgctgttatgatgtgaattttgat 19186796  T
Q  223 tatagaatgatgatg 237  Q
     |  |||||||||||    
T  19186795 cagtgaatgatgatg 19186781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 127 - 211
Target Start/End: Complemental strand, 10302828 - 10302744
Alignment:
Q  127 gggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatg 211  Q
    ||||| |||||||||||||||| |||||||||||||| ||  |||||||||||||||||||||| | ||||||  ||||||||||    
T  10302828 gggggagaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaataagttgttgatgttatgatg 10302744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 123 - 235
Target Start/End: Complemental strand, 22161844 - 22161732
Alignment:
Q  123 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat 222  Q
    ||||||||  |||||||||||||||| ||||||||||| || ||  | ||||||||||||||||| || |  ||||| ||||||||||||||||||||||    
T  22161844 gtaaggggtagaatctttgcactttagggtatcttaatttatgatggaagggttgtcttaaatttgaatacattgttgctgttatgatgtgaattttgat 22161745  T
Q  223 tatagaatgatga 235  Q
     |  |||||||||    
T  22161744 gagtgaatgatga 22161732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 10341169 - 10341070
Alignment:
Q  123 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat 222  Q
    ||||||||| |||| ||||||||||| |||||||||||||| |   ||||| |||||||||||||||| | ||||||  |||||||||| ||||||||||    
T  10341169 gtaagggggagaatatttgcactttagggtatcttaatctatggtgggaggattgtcttaaattttaataagttgttgatgttatgatgagaattttgat 10341070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 190
Target Start/End: Original strand, 16357825 - 16357886
Alignment:
Q  128 ggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaa 190  Q
    |||| |||||||||||||||| ||||||||||| || ||  ||| ||||||||||||||||||    
T  16357825 ggggagaatctttgcactttagggtatcttaatttatgatggga-ggttgtcttaaattttaa 16357886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 211
Target Start/End: Complemental strand, 14676 - 14588
Alignment:
Q  123 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatg 211  Q
    ||||||||| |||||||||||||||| |||||||||||||| ||  ||||||||||||| ||||| || |||||||| |||||||||||    
T  14676 gtaagggggagaatctttgcactttagggtatcttaatctatgatgggagggttgtctttaatttcaatatgttgttgctgttatgatg 14588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 222
Target Start/End: Original strand, 11838 - 11934
Alignment:
Q  126 agggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat 222  Q
    |||||| |||||||||||||||| ||| || |||| || || ||||||||||| ||||||||||| |||||||| |||||||||||| |||||||||    
T  11838 agggggagaatctttgcactttagggtgtcgtaatttatgataggagggttgtattaaattttaatatgttgttgctgttatgatgtaaattttgat 11934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 237
Target Start/End: Complemental strand, 12059 - 11955
Alignment:
Q  133 gaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgattatagaatga 232  Q
    |||| ||||||||||| ||||||||||| || ||  ||||||||||||||||||||||    ||||| |||||||||||||||||||||| | |||||||    
T  12059 gaatatttgcactttagggtatcttaatttatgatgggagggttgtcttaaattttaattcattgttgctgttatgatgtgaattttgatgagagaatga 11960  T
Q  233 tgatg 237  Q
    |||||    
T  11959 tgatg 11955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 123 - 237
Target Start/End: Complemental strand, 16258 - 16144
Alignment:
Q  123 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat 222  Q
    ||||||||| ||||||||| |||||| ||||||||||| || ||  ||||||| |||||||||||||| |  ||||| || |||||||||||||||||||    
T  16258 gtaagggggagaatctttgtactttagggtatcttaatttatgatgggagggtcgtcttaaattttaatacattgttgcttttatgatgtgaattttgat 16159  T
Q  223 tatagaatgatgatg 237  Q
     |  |||||||||||    
T  16158 gagtgaatgatgatg 16144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 123 - 237
Target Start/End: Original strand, 10454072 - 10454186
Alignment:
Q  123 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat 222  Q
    ||||||||  ||||||||| |||||| |||||||||||||| ||  || |||||||| || ||||||| ||||| || |||||||| |||||||||||||    
T  10454072 gtaaggggaagaatctttgaactttagggtatcttaatctatgatgggtgggttgtcctatattttaatatgtttttgctgttatggtgtgaattttgat 10454171  T
Q  223 tatagaatgatgatg 237  Q
     | ||||||||||||    
T  10454172 gagagaatgatgatg 10454186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 17861384 - 17861441
Alignment:
Q  177 gtcttaaattttaaaatgttgttactgttatgatgtgaattttgattatagaatgatg 234  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||    
T  17861384 gtcttaaattttaaaatgttgttactgttatgacgtgaattttgatgagagaatgatg 17861441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 1683281 - 1683229
Alignment:
Q  185 ttttaaaatgttgttactgttatgatgtgaattttgattatagaatgatgatg 237  Q
    |||||| |||||||| | |||||||||||||||||||| | ||| ||||||||    
T  1683281 ttttaatatgttgttgcggttatgatgtgaattttgatgagagactgatgatg 1683229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 237
Target Start/End: Complemental strand, 21496675 - 21496562
Alignment:
Q  123 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat 222  Q
    ||||||||| |||||||||||||||| |||||||||||||| |   |||||||| |||||||||| || |||||||| ||  |||||| ||||| || ||    
T  21496675 gtaagggggagaatctttgcactttagggtatcttaatctatg-tgggagggttatcttaaatttaaatatgttgtttctaatatgatatgaatatttat 21496577  T
Q  223 tatagaatgatgatg 237  Q
     | ||||||||||||    
T  21496576 gagagaatgatgatg 21496562  T

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Target: scaffold0207 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 211
Target Start/End: Original strand, 739 - 827
Alignment:
Q  123 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaa-aatgttgttactgttatgatg 211  Q
    ||||||||| ||| |||||||||||| |||||||||||||| ||  ||||||||||||| ||||||||  |||||||| |||||||||||    
T  739 gtaagggggagaa-ctttgcactttagggtatcttaatctatgattggagggttgtctttaattttaattatgttgttgctgttatgatg 827  T

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