View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16329_low_2 (Length: 293)
Name: NF16329_low_2
Description: NF16329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16329_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 9 - 275
Target Start/End: Complemental strand, 37600731 - 37600466
Alignment:
| Q |
9 |
acatcatcataatacaatgcacacagactccatgatgaccaacgacgacgtctcagttaccaacgccggtgaatactaccagattttagatagagagtga |
108 |
Q |
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| T |
37600731 |
acatcaacataatacaatgcacacagactccatgatgaccaacgacgacgtctctgttaccaacgccggtgaatactaccagattttagatagagagtga |
37600632 |
T |
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| Q |
109 |
ggacgaacggatctccatgatgatggccggcgacgtacctcaacgtcgggggagagaagaggggcagcgcggcggtggtcggcggttgatagtggcgaga |
208 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
37600631 |
ggacgaacggatctccatgatgattgccggcgacgtacctcaacgtc-ggggaaagaagaggggcagcgcggcggtggttggtggttgatagtggcgaga |
37600533 |
T |
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| Q |
209 |
ggcaaagaaacgatggtggtggtgataaaggacaaagtcatgggggagaaaggatctggaaggtgtg |
275 |
Q |
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| T |
37600532 |
ggcaaagaaacgatggtggtggtgataaaggacaaagtcatgggggagaaaggatctggaaggtgtg |
37600466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 9 - 275
Target Start/End: Original strand, 27660997 - 27661255
Alignment:
| Q |
9 |
acatcatcataatacaatgcacacagactccatgatgaccaacgacgacgtctcagttaccaacgccggtgaatactaccagattttagatagagagtga |
108 |
Q |
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|||||| |||||||||||||||||||||||||||| |||| ||| || |||| |||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
27660997 |
acatcaacataatacaatgcacacagactccatgacgaccggtgacaacatctctgttaccaacgccggtgaatactaccatatttcagatagagagtga |
27661096 |
T |
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| Q |
109 |
ggacgaacggatctccatgatgatggccggcgacgtacctcaacgtcgggggagagaagaggggcagcgcggcggtggtcggcggttgatagtggcgaga |
208 |
Q |
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| T |
27661097 |
ggacgaacggatctccatgatgatggccagcgacgtacctcaacgtcgggggaaaaaagaggggcagcgcggtggt-------ggttgatagtggcgaga |
27661189 |
T |
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| Q |
209 |
ggcaaagaaacgatggtggtggtgataaaggacaaagtcatgggggagaaaggatctggaaggtgtg |
275 |
Q |
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|||| |||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| |
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| T |
27661190 |
ggcagagaaacgatggtggtggtgataggggacagagtcatgggggagaaaggat-tggaaggtgtg |
27661255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 51 - 168
Target Start/End: Complemental strand, 4096713 - 4096589
Alignment:
| Q |
51 |
cgacgacgtctcagttaccaacgccggtgaatactaccagattttagat--agagagtgaggacgaacggatctccatgatgatggccggcgacgtacct |
148 |
Q |
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|||||||||||| ||||||||||| ||||||||| |||||||| || |||||||||| ||| |||| | ||||||||||||||||| ||||||||| |
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| T |
4096713 |
cgacgacgtctccgttaccaacgctggtgaatacgaccagattccgaatggagagagtgagaacgcacggttttccatgatgatggccggtgacgtacct |
4096614 |
T |
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| Q |
149 |
ca-----acgtcgggggagagaaga |
168 |
Q |
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| T |
4096613 |
caaacggacgtcgggggagagaaga |
4096589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 51 - 168
Target Start/End: Complemental strand, 52916231 - 52916107
Alignment:
| Q |
51 |
cgacgacgtctcagttaccaacgccggtgaatactaccagattttagat--agagagtgaggacgaacggatctccatgatgatggccggcgacgtacct |
148 |
Q |
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|||||||||||| |||| |||||| ||||||||| |||||||| || |||||||||| ||| |||| | ||||||||||||||||| ||||||||| |
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| T |
52916231 |
cgacgacgtctccgttatcaacgctggtgaatacgaccagattccgaatggagagagtgagaacgcacggttttccatgatgatggccggtgacgtacct |
52916132 |
T |
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| Q |
149 |
ca-----acgtcgggggagagaaga |
168 |
Q |
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|| |||||||||||||||||| |
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| T |
52916131 |
caaacggacgtcgggggagagaaga |
52916107 |
T |
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