View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1632_high_1 (Length: 776)
Name: NF1632_high_1
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1632_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 637; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 17 - 773
Target Start/End: Original strand, 53956850 - 53957631
Alignment:
| Q |
17 |
aattgaatggtagtgtggtattctaattttattttattttaaa--aatataagttaagaattatggcatttggagcagggcttgttataattgcattgaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
53956850 |
aattgaatggtagtgtggtattctaattttattttatttttaataaatataagttaagaattatgacatttggagcagggcttgttataattgcattgaa |
53956949 |
T |
|
| Q |
115 |
agtaccttctggtgattccacatataactcagcaccctgtgcaagaatcaatcttcctttttcaaagtcaaaatccaaatcgtagttgtcttcaataggc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53956950 |
agtaccttctggtgattccacatataactcagcaccctgtgcaagaatcaatcttcctttttcaaagtcaaaatccaaatcgtagttgtcttcaataggc |
53957049 |
T |
|
| Q |
215 |
aagatgggggctcccccattcaatctgttccttgatcctgatcttactttaagtgtggctgctccttttaatgctacagttagccaacaatttttgttca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53957050 |
aagatgggggctcccccattcaatctgttccttgatcctgatcttactttaagtgtggctgctccttttaatgctacagttagccaacaatttttgttca |
53957149 |
T |
|
| Q |
315 |
gtaacagattttgttcacccatattaaattttaaaaaataattgacataaaaagtttattttttattggt-----ggggggtcatgttatgactgtaaat |
409 |
Q |
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|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
53957150 |
gtaacaga--ttgttcacccatattaaatttaaaaaaataattgacataaaaagtttattttttattggtgggggggggggtcatgttatgactgtaaat |
53957247 |
T |
|
| Q |
410 |
cttttgctaattctagcatatata--------------------taataccccaaaactatgaaccacgaacactcattggattagacgtgtcccaccga |
489 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
53957248 |
cttttgctaattctagcatatatatatatatatatatatatatgtaataccccaaaactatgaaccacagacactcattggattagacgtgtcccaccga |
53957347 |
T |
|
| Q |
490 |
cacatataattacactgaatcgtgtccggtgtctgtgtccgtattcgttcttcatagtctcaaaataattgtattaaataaaagtatgagttgaaataat |
589 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53957348 |
caaatataattacactgaatcgtgtccggtgtctgtgtccgtattcgtgcttcatagtctcaaaataattgtattaaataaaagtatgagttgaaataat |
53957447 |
T |
|
| Q |
590 |
aaaaattactacatgttgcagctgcagcagtgagagttaggatatcactagcacttgtgccattcatggctgagccaataacacttctaagatcctcttt |
689 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53957448 |
aaaaattactacatgttgcagctgcagcagtgagagttaggatatcactagcacttgtgccattcatggctgagccaataacacttctaagatcctcttt |
53957547 |
T |
|
| Q |
690 |
cttagctccctttgctacagctacttttgcacactgagcagctaccaaagcagcagcagaggctattgctttctctctatcttc |
773 |
Q |
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|||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53957548 |
cttagctcccattgattcagctacttttgcacactgagcagctaccaaagcagcagcagaggctattgctttctctctatcttc |
53957631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 447 - 505
Target Start/End: Complemental strand, 17124276 - 17124216
Alignment:
| Q |
447 |
ctatgaaccacgaacactcattggattagacgtgtcc--caccgacacatataattacact |
505 |
Q |
| |
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|||||||||||| |||||||| ||||||||||||| | |||||| ||||||||||||||| |
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| T |
17124276 |
ctatgaaccacggacactcatcggattagacgtgttcgacaccgatacatataattacact |
17124216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 448 - 509
Target Start/End: Original strand, 34691770 - 34691833
Alignment:
| Q |
448 |
tatgaaccacgaacactcattggattagacgtgtcc--caccgacacatataattacactgaat |
509 |
Q |
| |
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|||||| |||| |||||| | ||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
34691770 |
tatgaaacacggacactcctcggattaggcgtgtccgacaccgacacatataattacactgaat |
34691833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 448 - 509
Target Start/End: Original strand, 34714182 - 34714245
Alignment:
| Q |
448 |
tatgaaccacgaacactcattggattagacgtgtcc--caccgacacatataattacactgaat |
509 |
Q |
| |
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|||||| |||| |||||| | ||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
34714182 |
tatgaaacacggacactcctcggattaggcgtgtccgacaccgacacatataattacactgaat |
34714245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 447 - 509
Target Start/End: Original strand, 31855772 - 31855836
Alignment:
| Q |
447 |
ctatgaaccacgaacactcattggattagacgtgtcc--caccgacacatataattacactgaat |
509 |
Q |
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||||||| |||||||||| || |||||||||||| | ||||||||||| |||||||||||||| |
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| T |
31855772 |
ctatgaagtacgaacactccttagattagacgtgttcgacaccgacacatctaattacactgaat |
31855836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 509 - 546
Target Start/End: Complemental strand, 7171483 - 7171446
Alignment:
| Q |
509 |
tcgtgtccggtgtctgtgtccgtattcgttcttcatag |
546 |
Q |
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||||||||||||||||||||||||| ||| |||||||| |
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| T |
7171483 |
tcgtgtccggtgtctgtgtccgtatccgtgcttcatag |
7171446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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