View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1632_high_12 (Length: 495)

Name: NF1632_high_12
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1632_high_12
NF1632_high_12
[»] chr7 (2 HSPs)
chr7 (19-281)||(45066500-45066762)
chr7 (289-479)||(45066869-45067059)
[»] chr3 (1 HSPs)
chr3 (289-361)||(3537352-3537425)
[»] chr2 (2 HSPs)
chr2 (289-351)||(16625677-16625739)
chr2 (308-356)||(7367744-7367792)
[»] chr8 (1 HSPs)
chr8 (290-361)||(34336177-34336249)
[»] chr5 (1 HSPs)
chr5 (293-361)||(38568241-38568309)
[»] chr1 (1 HSPs)
chr1 (316-356)||(38795279-38795319)


Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 45066500 - 45066762
Alignment:
Q  19 ctatgagttttataaggnnnnnnntgtaaatcactttgagttgatattttaaatagtattgcaaaacattagccagaaagagggaggaaaagaaactcta 118  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  45066500 ctatgagttttataaggaaaaaaatgtaaatcactttgagttgatattttaaatagtatcgcaaaacattagccagaaagagggaggaaaagaaactcta 45066599  T
Q  119 ggctttgtttgcgagtttagagggaaggggatgacattgnnnnnnntgaaggagcaaatggaagatatagaatacattagaagggaggggttttgggatt 218  Q
    |||||||||||||||||||||||||||||||| ||||||       ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  45066600 ggctttgtttgcgagtttagagggaaggggataacattgaaaaaaatgaaggagcaaatggaagaaatagaatacattagaagggaggggttttgggatt 45066699  T
Q  219 catttttcttcataagacggtatcctctagttcagggaactaaaatattgtattggaggagag 281  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45066700 catttttcttcataagacggtatcctctagttcagggaactacaatattgtattggaggagag 45066762  T

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Target: chr7; HSP #2
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 289 - 479
Target Start/End: Original strand, 45066869 - 45067059
Alignment:
Q  289 atcattctctaagaaatgctctttaacaaaatttgaaagatttcttcattttccgctatattttccacacctctaaacagcagcaccaattccttccttc 388  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  45066869 atcattctttaagaaatgctctttaacaaaatttgaaagatttcttcattttccgctatattttccacacccctaaacagcagcaccaattccttccttc 45066968  T
Q  389 tctaaacgagacactgctatcaaccgcctagatgaatatagtttggtttttaggatttccggatttacacattttctattgaaaaacacat 479  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45066969 tctaaacgagacactgctatcaaccgcctagatgaatatagtttggtttttaggatttccggatttacacattttctattgaaaaacacat 45067059  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 289 - 361
Target Start/End: Original strand, 3537352 - 3537425
Alignment:
Q  289 atcattctctaagaaa-tgctctttaacaaaatttgaaagatttcttcattttccgctatattttccacacctc 361  Q
    |||||||||||| ||| | |||||| | |||||||||||||||||||||||||||   ||||||||||| ||||    
T  3537352 atcattctctaaaaaactactcttttaaaaaatttgaaagatttcttcattttccctcatattttccacccctc 3537425  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 351
Target Start/End: Complemental strand, 16625739 - 16625677
Alignment:
Q  289 atcattctctaagaaatgctctttaacaaaatttgaaagatttcttcattttccgctatattt 351  Q
    |||||||||||| |||| |||||| | ||||| |||||||||||| ||||| || ||||||||    
T  16625739 atcattctctaaaaaatactctttcaaaaaatgtgaaagatttctccatttccctctatattt 16625677  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 356
Target Start/End: Original strand, 7367744 - 7367792
Alignment:
Q  308 tctttaacaaaatttgaaagatttcttcattttccgctatattttccac 356  Q
    ||||||| ||||| |||||||||||||||||||||   |||||||||||    
T  7367744 tctttaaaaaaatgtgaaagatttcttcattttccctcatattttccac 7367792  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 361
Target Start/End: Original strand, 34336177 - 34336249
Alignment:
Q  290 tcattctctaagaaa-tgctctttaacaaaatttgaaagatttcttcattttccgctatattttccacacctc 361  Q
    ||||||||||| ||| | |||||| |||||||||||||||||||| |||||| |   ||||||||||| ||||    
T  34336177 tcattctctaaaaaactactcttttacaaaatttgaaagatttctccatttttcctcatattttccacccctc 34336249  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 293 - 361
Target Start/End: Complemental strand, 38568309 - 38568241
Alignment:
Q  293 ttctctaagaaatgctctttaacaaaatttgaaagatttcttcattttccgctatattttccacacctc 361  Q
    |||||||| || | |||||| | |||| ||||||||||||||||||||||   ||||||||||| ||||    
T  38568309 ttctctaaaaactactcttttaaaaaaattgaaagatttcttcattttccctcatattttccacccctc 38568241  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 38795319 - 38795279
Alignment:
Q  316 aaaatttgaaagatttcttcattttccgctatattttccac 356  Q
    |||||||||||||||||||||||||||   |||||||||||    
T  38795319 aaaatttgaaagatttcttcattttccctcatattttccac 38795279  T

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