View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1632_high_18 (Length: 438)
Name: NF1632_high_18
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1632_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 15 - 420
Target Start/End: Original strand, 28553200 - 28553604
Alignment:
| Q |
15 |
cataggttcaaattgaattaaggagaactagtagattgcatggtttcaaatagtatcatagaggttcatcattcaatcataatctaatgagtttagctac |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28553200 |
cataggttcaaattgaattaaggagaactagtagattgcatggtttcaaatagtatcatagaggttcatcattcaattataatctaatgagtttagctac |
28553299 |
T |
|
| Q |
115 |
tcataatagtaacaaaatacataatcgaaggttaaaggaataatacatgcaaatagtgtgacaataatcttcaatcttgttgacaaaggttgaaaatcgc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28553300 |
tcataatagtaacaaaatacataatcgaaggttaaaggaataatacatgcaaatagtgtgacaataatcttcaatcttgttgacaaaggttgaaaatcgc |
28553399 |
T |
|
| Q |
215 |
cacttcaggtcgtagggatcgcgacttatgtcttttaagtcttcaaaattcataatcagttgcatccggatgaaattttgaaattatagagaatatttca |
314 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
28553400 |
cacttcaggtcgtagggatcgcaccttatgtcttttaagtcttcaaaattcataatcagttgcatctggatgaaattttgaaattatagataatatttca |
28553499 |
T |
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| Q |
315 |
gtatacgcttgcgtgtcgcgtaggactctacgtgcgttacat-ggttcagttgaactagcttcacagttaggcatcaaatgcatatctagcgtagattaa |
413 |
Q |
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||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28553500 |
gtatatgcttgcgcgtcgcgtaggactctacgtgcgttacatgggttcagttgaactagcttcacagttaggcat--aatgcatatctagcgtagattaa |
28553597 |
T |
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| Q |
414 |
cattgtg |
420 |
Q |
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||||||| |
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| T |
28553598 |
cattgtg |
28553604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 31008133 - 31007988
Alignment:
| Q |
78 |
gttcatcattcaatcataatctaatgagtttagctactcataatagtaacaaaatacataatcgaaggttaaaggaataatacatgcaaatagtgtgaca |
177 |
Q |
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|||||||||||||||||||||||| |||||||| ||| ||| ||| | || |||||||| || | |||| |||| ||||||||||| | |||||| |
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| T |
31008133 |
gttcatcattcaatcataatctaaagagtttagttacacatgataatggtcaataacataatcaaaagataaaagaatgatacatgcaaagatagtgaca |
31008034 |
T |
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| Q |
178 |
ataatcttcaatcttgttgacaaaggttgaaaatcgccacttcagg |
223 |
Q |
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| T |
31008033 |
ccactcttcaatcttgtttccaatggttgaaaaacgccacttcagg |
31007988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 29636502 - 29636566
Alignment:
| Q |
60 |
tcaaatagtatcatagaggttcatcattcaatcataatctaatgagtttagctactcataatagt |
124 |
Q |
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| T |
29636502 |
tcaaatagtaccatagatgttcatcattcaatcctaacctaatgagtttaggtgctcatgatagt |
29636566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 52256612 - 52256676
Alignment:
| Q |
95 |
aatctaatgagtttagctactcataatagtaacaaaatacataatcgaaggttaaaggaataatacat |
162 |
Q |
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||||||| |||||||||||||||||||||||| || |||||||| |||||| || ||| ||||||| |
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| T |
52256612 |
aatctaacgagtttagctactcataatagtaataa---acataatcaaaggtttaaagaacaatacat |
52256676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 26511811 - 26511771
Alignment:
| Q |
78 |
gttcatcattcaatcataatctaatgagtttagctactcat |
118 |
Q |
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| T |
26511811 |
gttcaccattcaatcatgatctaatgagtttaactactcat |
26511771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 8355532 - 8355585
Alignment:
| Q |
53 |
catggtttcaaatagtatcatagaggttcatcattcaatcataatctaatgagt |
106 |
Q |
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|||||||| ||| |||| |||||| ||| || |||||||||||||||||||||| |
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| T |
8355532 |
catggttttaaacagtaccatagatgtttattattcaatcataatctaatgagt |
8355585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 140
Target Start/End: Original strand, 31258807 - 31258888
Alignment:
| Q |
59 |
ttcaaatagtatcatagaggttcatcattcaatcataatctaatgagtttagctactcataatagtaacaaaatacataatc |
140 |
Q |
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|||||| | ||||||| | |||||||||| |||| ||||||||||||||||||||| || ||| ||| ||| |||||||| |
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| T |
31258807 |
ttcaaacaatatcatacaagttcatcattaaatctaaatctaatgagtttagctacttatcatattaataaacaacataatc |
31258888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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