View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1632_high_21 (Length: 424)
Name: NF1632_high_21
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1632_high_21 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 6969618 - 6969212
Alignment:
| Q |
18 |
cattaatcattgaattccatgagaccaaggtcctttcagaaatatcatcaaacactctccttgcacttgtaatcaaaccacaagcaacataaatattcaa |
117 |
Q |
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| T |
6969618 |
cattaatcattgaattccatgagaccaaggtcctttcagaaatatcatcaaacactctccttgcacttgttatcaaaccacaagcaacataaatattcaa |
6969519 |
T |
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| Q |
118 |
aattgcattctgaacacaagcatgtgaccccattccaagcttaaaagactgagcatgaacacaaacaccaagccaataacacgatttcgcagcacaagct |
217 |
Q |
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| T |
6969518 |
aattgcattctgaacacaagcatgtgaccccattccaagcttaaaagactgagcatgaacacaaacaccaagccaataacacgatttcgcagcacaagct |
6969419 |
T |
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| Q |
218 |
ttgagaacaaaagggatggtaaactggtttggtaaaataccatcacacaccattcgacggtaaagtaacaaagacttaattgggtcactggaattagaat |
317 |
Q |
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| T |
6969418 |
ttgagaacaaaagggatggtaaactggtttggtaaaataccatcacacaccattcgacggtaaagtaacaaagacttaattgggtcactggaattagaat |
6969319 |
T |
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| Q |
318 |
aaccctttattaaatggttaaacatgaatttatttggttgaggaatttgatcaaacagtttgtgtgcgtaacgaagatctcgaagatggacactggagga |
417 |
Q |
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| T |
6969318 |
aaccctttattaaatggttaaacatgaatttatttggttgaggaatttgatcaaacagtttgtgtgcgtaacgaagatctcgaagttggacactggagga |
6969219 |
T |
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| Q |
418 |
gactaat |
424 |
Q |
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| T |
6969218 |
gactaat |
6969212 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 352 - 384
Target Start/End: Original strand, 20817804 - 20817836
Alignment:
| Q |
352 |
tggttgaggaatttgatcaaacagtttgtgtgc |
384 |
Q |
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| T |
20817804 |
tggttgaggaatttgatcaaacagtttgtgtgc |
20817836 |
T |
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