View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1632_high_23 (Length: 402)
Name: NF1632_high_23
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1632_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 307 - 381
Target Start/End: Original strand, 8518230 - 8518304
Alignment:
| Q |
307 |
tttgaagctatgaataagtttgcttgactgaaaatggtagagttagcactaccaccaatggcatacatgttccac |
381 |
Q |
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| T |
8518230 |
tttgaagctatgaataagtttgcttgactgaaaatggtagggtgagcactaccaccaatggcatacatgctccac |
8518304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 291 - 386
Target Start/End: Original strand, 8526108 - 8526203
Alignment:
| Q |
291 |
ttttgcatgagaatcttttgaagctatgaataagtttgcttgactgaaaatggtagagttagcactaccaccaatggcatacatgttccacccatc |
386 |
Q |
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| T |
8526108 |
ttttgcattagaattttttgaagctatgaagtaatttgcttgactgaaaatggtagggtcagcactaccaccaatggcatacatgatccactcatc |
8526203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 124
Target Start/End: Original strand, 8517974 - 8518019
Alignment:
| Q |
79 |
taaatataagctgaaattgtgaaatctattaagcattgacataatc |
124 |
Q |
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| T |
8517974 |
taaatataagctgaaatggtgaaatctattaagcattgatataatc |
8518019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 8517927 - 8517970
Alignment:
| Q |
16 |
ttctctcttggtaacctgtaacagtttaataaaccatactcaactc |
61 |
Q |
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| T |
8517927 |
ttctctcttggtaacctgtcacagtttaat--accatactcaactc |
8517970 |
T |
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