View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1632_high_25 (Length: 388)

Name: NF1632_high_25
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1632_high_25
NF1632_high_25
[»] chr2 (5 HSPs)
chr2 (1-220)||(45338515-45338734)
chr2 (1-220)||(45336203-45336422)
chr2 (1-223)||(17648808-17649034)
chr2 (6-173)||(14662318-14662489)
chr2 (10-66)||(132764-132820)
[»] chr5 (2 HSPs)
chr5 (1-221)||(32797949-32798169)
chr5 (1-220)||(32800262-32800481)
[»] chr1 (2 HSPs)
chr1 (1-220)||(1550100-1550319)
chr1 (6-220)||(9535199-9535413)
[»] chr8 (3 HSPs)
chr8 (1-220)||(44734096-44734315)
chr8 (1-219)||(44731786-44732004)
chr8 (221-373)||(10044143-10044297)
[»] chr3 (9 HSPs)
chr3 (1-220)||(28784457-28784676)
chr3 (1-221)||(48707676-48707902)
chr3 (1-173)||(48023981-48024157)
chr3 (20-173)||(48027291-48027448)
chr3 (6-220)||(48025097-48025316)
chr3 (8-96)||(5354600-5354688)
chr3 (6-173)||(48024537-48024708)
chr3 (158-220)||(5907718-5907781)
chr3 (48-133)||(5907771-5907859)
[»] chr4 (3 HSPs)
chr4 (9-221)||(22804552-22804766)
chr4 (20-173)||(7230964-7231118)
chr4 (158-220)||(44640115-44640179)
[»] chr6 (1 HSPs)
chr6 (36-178)||(6723446-6723591)
[»] chr7 (2 HSPs)
chr7 (1-220)||(13111097-13111321)
chr7 (6-179)||(13108809-13108986)


Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 45338734 - 45338515
Alignment:
Q  1 aagcatgcttgtaagactaaacataaaaactgcaataaatctactataaacactagtcatcattacctaagaaccatagatatcattacctaggactctt 100  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45338734 aagcttgcttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggactctt 45338635  T
Q  101 acttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatcatgacagaaaataacaacacaattaattattaaatcag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  45338634 acttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaattaattattaaatcag 45338535  T
Q  201 aaaaatatcaatctccaaca 220  Q
    ||||||||||||||||||||    
T  45338534 aaaaatatcaatctccaaca 45338515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 45336422 - 45336203
Alignment:
Q  1 aagcatgcttgtaagactaaacataaaaactgcaataaatctactataaacactagtcatcattacctaagaaccatagatatcattacctaggactctt 100  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45336422 aagcttgcttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggactctt 45336323  T
Q  101 acttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatcatgacagaaaataacaacacaattaattattaaatcag 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  45336322 acttaccaaataagcaacaatctaaatatgacacttaaacttacacaagcaacacattaattatgacagaaaataacaacacaattaattattaaatcag 45336223  T
Q  201 aaaaatatcaatctccaaca 220  Q
    ||||||||||||||||||||    
T  45336222 aaaaatatcaatctccaaca 45336203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 17649034 - 17648808
Alignment:
Q  1 aagcatgcttgtaagactaaacataaaaactgcaataaatctactataaacactagtcatcattacctaagaaccatagatatcattaccta-ggactct 99  Q
    |||| ||||||||||| | |||||||||  |||| |||||||||| |||||||||||||||||||||||||||   |||| ||||||||||| ||||| |    
T  17649034 aagcttgcttgtaagattgaacataaaatatgcactaaatctactctaaacactagtcatcattacctaagaatattagacatcattacctaaggactat 17648935  T
Q  100 t--acttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatcatgacag-aaaataaca--acacaattaattatta 194  Q
    |  || |||  ||||||||||||||||| |||||||  | |||||||||||||||||   |||| ||||||| |||| | ||  |||||| ||||||  |    
T  17648934 tttacatacttaataagcaacaatctaattatgaca--ttaacttaaacaagcaacaagctaattatgacagaaaaacagcagcacacaagtaattaaca 17648837  T
Q  195 aatcagaaaaatatcaatctccaacaatt 223  Q
    || ||||||||||||||||||||||||||    
T  17648836 aaacagaaaaatatcaatctccaacaatt 17648808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 6 - 173
Target Start/End: Complemental strand, 14662489 - 14662318
Alignment:
Q  6 tgcttgtaagactaaacataaaaactgcaataaatctactataaa-cactagtcatcattacctaagaaccatagatatcattacctagg-actctt--a 101  Q
    ||||||||| ||| ||||||| | |||||  ||||||||| | || |||||||||| ||||||||  ||| ||||| ||||||||||||| ||| ||  |    
T  14662489 tgcttgtaaaactgaacataagatctgcacgaaatctactcttaagcactagtcattattacctagcaacaatagacatcattacctagggactgtttta 14662390  T
Q  102 cttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatcatgacagaaaa 173  Q
    ||||| ||||||||||| |||||| ||||||||||| || |||||||||||||| ||||| |||||||||||    
T  14662389 cttactaaataagcaacgatctaattatgacacttatacataaacaagcaacactttaattatgacagaaaa 14662318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 132820 - 132764
Alignment:
Q  10 tgtaagactaaacataaaaactgcaataaatctactataaacactagtcatcattac 66  Q
    ||||||||| || || ||| |||||||||||||||| |||||||||| |||||||||    
T  132820 tgtaagactgaaaatcaaatctgcaataaatctactctaaacactagccatcattac 132764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 32798169 - 32797949
Alignment:
Q  1 aagcatgcttgtaagactaaacataaaaactgcaataaatctactataaacactagtcatcattacctaagaaccatagatatcattacctaggactctt 100  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32798169 aagcttgcttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggactctt 32798070  T
Q  101 acttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatcatgacagaaaataacaacacaattaattattaaatcag 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32798069 acttaccaaataagcaacaatctaattatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaattaattattaaatcag 32797970  T
Q  201 aaaaatatcaatctccaacaa 221  Q
    |||||||||||||||||||||    
T  32797969 aaaaatatcaatctccaacaa 32797949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 32800481 - 32800262
Alignment:
Q  1 aagcatgcttgtaagactaaacataaaaactgcaataaatctactataaacactagtcatcattacctaagaaccatagatatcattacctaggactctt 100  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32800481 aagcttgcttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggactctt 32800382  T
Q  101 acttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatcatgacagaaaataacaacacaattaattattaaatcag 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32800381 acttaccaaataagcaacaatctaattatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaattaattattaaatcag 32800282  T
Q  201 aaaaatatcaatctccaaca 220  Q
    ||||||||||||||||||||    
T  32800281 aaaaatatcaatctccaaca 32800262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 1550319 - 1550100
Alignment:
Q  1 aagcatgcttgtaagactaaacataaaaactgcaataaatctactataaacactagtcatcattacctaagaaccatagatatcattacctaggactctt 100  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1550319 aagcttgcttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggactctt 1550220  T
Q  101 acttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatcatgacagaaaataacaacacaattaattattaaatcag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  1550219 acttaccaaataagcaacaatctaactatgacacttaaacttatacaagcaacacattaattatgacataaaataacaacacaattaattattaaatcag 1550120  T
Q  201 aaaaatatcaatctccaaca 220  Q
    ||||||||||||||||||||    
T  1550119 aaaaatatcaatctccaaca 1550100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 6 - 220
Target Start/End: Complemental strand, 9535413 - 9535199
Alignment:
Q  6 tgcttgtaagactaaacataaaaactgcaataaatctactataaacactagtcatcattacctaagaaccatagatatcattacctaggactcttactta 105  Q
    ||||||||||||||||||||||| || || |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9535413 tgcttgtaagactaaacataaaatctacactaaatctactctaaacactagtcatcattacctaagaaccatagaaatcattacctaggactcttactta 9535314  T
Q  106 ccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatcatgacagaaaataacaacacaattaattattaaatcagaaaaa 205  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||    
T  9535313 ccaaataagcaacaatctaattatgacacttaaacttaaacaagcaacacattaattttgacagaaaataacaacacaattaattattaaaccagaaaaa 9535214  T
Q  206 tatcaatctccaaca 220  Q
    |||||||||||||||    
T  9535213 tatcaatctccaaca 9535199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 44734315 - 44734096
Alignment:
Q  1 aagcatgcttgtaagactaaacataaaaactgcaataaatctactataaacactagtcatcattacctaagaaccatagatatcattacctaggactctt 100  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44734315 aagcttgcttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagacatcattacctaggactctt 44734216  T
Q  101 acttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatcatgacagaaaataacaacacaattaattattaaatcag 200  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  44734215 acttaccaaataagcaacaacctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaattaatttttaaatcag 44734116  T
Q  201 aaaaatatcaatctccaaca 220  Q
    ||||||||||||||||||||    
T  44734115 aaaaatatcaatctccaaca 44734096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 44732004 - 44731786
Alignment:
Q  1 aagcatgcttgtaagactaaacataaaaactgcaataaatctactataaacactagtcatcattacctaagaaccatagatatcattacctaggactctt 100  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||| |||||||||||||| | |||||||||||||||||||    
T  44732004 aagcttgcttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcatcacctaagaaccatatacatcattacctaggactctt 44731905  T
Q  101 acttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatcatgacagaaaataacaacacaattaattattaaatcag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  44731904 acttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaattaatttttaaatcag 44731805  T
Q  201 aaaaatatcaatctccaac 219  Q
    |||||||||||||||||||    
T  44731804 aaaaatatcaatctccaac 44731786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 221 - 373
Target Start/End: Original strand, 10044143 - 10044297
Alignment:
Q  221 attatgaaagccagcagaagaaaaactgagaaagaaacacaaactgaaaagaattccaagtaacaaggccccacgcaaaataatctccttcatcgtaaca 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10044143 attatgaaagccagcagaagaaaaactgagaaagaaacacaaactgaaaagaattccaagtaacaaggccccacgcaaaataatctccttcatcataaca 10044242  T
Q  321 agattagatgtggatttcgctgcagcccta--ggaggcttttaacctatttatag 373  Q
     |||||||||||| |||||||||| |||||  |||||||||||||||||||||||    
T  10044243 ggattagatgtggttttcgctgcaaccctaatggaggcttttaacctatttatag 10044297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 28784676 - 28784457
Alignment:
Q  1 aagcatgcttgtaagactaaacataaaaactgcaataaatctactataaacactagtcatcattacctaagaaccatagatatcattacctaggactctt 100  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28784676 aagcttgcttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagacatcattacctaggactctt 28784577  T
Q  101 acttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatcatgacagaaaataacaacacaattaattattaaatcag 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||    
T  28784576 acttaccaaataagcaacaatctaactataacacttaaacttaaacaagcaacacattaattatgagagaaaataacaacacaattaatttttaaatcag 28784477  T
Q  201 aaaaatatcaatctccaaca 220  Q
    ||||||||||||||||||||    
T  28784476 aaaaatatcaatctccaaca 28784457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 48707676 - 48707902
Alignment:
Q  1 aagcatgcttgtaagactaaacataaaaactgcaataaatctactataaacactagtcatcattacctaagaaccatagatatcattacctaggactctt 100  Q
    |||| ||||||||||||||||||||||| || || |||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  48707676 aagcttgcttgtaagactaaacataaaatctacactaaatctactttaaacactagtcatcattacctaaaaaccatagacatcattacctaggactctt 48707775  T
Q  101 acttaccaaataagcaacaatctaactatgac------acttaaacttaaacaagcaacacattaatcatgacagaaaataacaacacaattaattatta 194  Q
    ||||||||||||| ||||||||||||||||||      ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  48707776 acttaccaaataaacaacaatctaactatgacacttaaacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaattaattatta 48707875  T
Q  195 aatcagaaaaatatcaatctccaacaa 221  Q
    |||||||||||||||||||||||||||    
T  48707876 aatcagaaaaatatcaatctccaacaa 48707902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 48023981 - 48024157
Alignment:
Q  1 aagcatgcttgtaagactaaacataaaaactgcaataaatctact-ataaacactagtcatcattacctaagaaccatagatatcattacc-taggac-- 96  Q
    |||| ||||||||||||| ||||||||| ||||| ||||||||||  ||| |||||||||||||||||||||  |  |||| ||||||||| | ||||      
T  48023981 aagcttgcttgtaagactgaacataaaatctgcactaaatctactcttaagcactagtcatcattacctaagttcattagacatcattaccttgggactg 48024080  T
Q  97 tcttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatcatgacagaaaa 173  Q
    | |||||||| |||||||||||||||||| ||||||||||| || |||||||| ||||| ||||| |||||||||||    
T  48024081 ttttacttactaaataagcaacaatctaattatgacacttatacataaacaagtaacactttaattatgacagaaaa 48024157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 20 - 173
Target Start/End: Original strand, 48027291 - 48027448
Alignment:
Q  20 aacataaaaactgcaataaatctactataaa-cactagtcatcattacctaagaaccatagatatcattacctagg-actctt--acttaccaaataagc 115  Q
    ||||||||| || || |||||||||| | || |||||||||||||||||||||||| ||||| ||||||||||||| ||| ||  |||||| ||||||||    
T  48027291 aacataaaatctacactaaatctactcttaagcactagtcatcattacctaagaacaatagacatcattacctagggactgttttacttactaaataagc 48027390  T
Q  116 aacaatctaactatgacacttaaacttaaacaagcaacacattaatcatgacagaaaa 173  Q
    |||||||||| ||||||||||| || |||||||||||||| | ||| ||| |||||||    
T  48027391 aacaatctaattatgacacttatacataaacaagcaacacttaaattatggcagaaaa 48027448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 6 - 220
Target Start/End: Original strand, 48025097 - 48025316
Alignment:
Q  6 tgcttgtaagactaaacataaaaactgcaataaatctactataaa-cactagtcatcattacctaagaaccatagatatcattacctaggactc---tta 101  Q
    |||||||||||   ||||||||| || || |||||||||| | || |||||||||||||||||||||||| ||||| ||||||| || ||  |    |||    
T  48025097 tgcttgtaagaaggaacataaaatctacactaaatctactcttaagcactagtcatcattacctaagaacaatagacatcattaacttgggattgtttta 48025196  T
Q  102 cttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatcatgacagaaaataacaaca-caattaattattaaatcag 200  Q
    ||||| |||||||||||||||||| ||||||| ||| || |||||||||||||| ||||| ||||||||||| | ||  |  || ||||||  ||| |||    
T  48025197 cttactaaataagcaacaatctaattatgacatttatacataaacaagcaacactttaattatgacagaaaacagcagtagaaaataattaacaaaacag 48025296  T
Q  201 aaaaatatcaatctccaaca 220  Q
    ||||||||||||||||||||    
T  48025297 aaaaatatcaatctccaaca 48025316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 5354600 - 5354688
Alignment:
Q  8 cttgtaagactaaacataaaaactgcaataaatctactataaacactagtcatcattacctaagaaccatagatatcattacctaggac 96  Q
    ||||||||||||||||||||| ||||| |||||||||| |||||||||||||| ||||||||||||||||| | |||||||||||||||    
T  5354600 cttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcattattacctaagaaccataaacatcattacctaggac 5354688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 6 - 173
Target Start/End: Original strand, 48024537 - 48024708
Alignment:
Q  6 tgcttgtaagactaaacataaaaactgcaataaatctactataaa-cactagtcatcattacctaagaaccatagatatcattacc-taggac--tctta 101  Q
    |||||||||||   ||||||||| || || |||||||||||| || |||||||||||||||||||||||| ||| | ||||||||| | ||||  | |||    
T  48024537 tgcttgtaagaaggaacataaaatctacactaaatctactattaagcactagtcatcattacctaagaacaataaacatcattaccttgggactgtttta 48024636  T
Q  102 cttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatcatgacagaaaa 173  Q
    ||||| |||||||||||||||||| ||||||||||| || |||||| ||||||  ||||| |||||||||||    
T  48024637 cttactaaataagcaacaatctaattatgacacttatacataaacatgcaacattttaattatgacagaaaa 48024708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 220
Target Start/End: Complemental strand, 5907781 - 5907718
Alignment:
Q  158 taatcatgacagaaaataacaa-cacaattaattattaaatcagaaaaatatcaatctccaaca 220  Q
    |||| |||||||||||| |||| ||||| ||||||||||| |||||||||||||||||||||||    
T  5907781 taattatgacagaaaattacaaacacaagtaattattaaaccagaaaaatatcaatctccaaca 5907718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 5907859 - 5907771
Alignment:
Q  48 aaacactagtcatcattacctaagaaccatagatatcattacctag-gactctt--acttaccaaataagcaacaatctaactatgaca 133  Q
    ||||| |||||||||||||||||||||| || | || ||||||||| |||| ||  |||| | |||||||||||||||||| |||||||    
T  5907859 aaacattagtcatcattacctaagaaccgtatacattattacctagagactttttcacttgctaaataagcaacaatctaattatgaca 5907771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 160; Significance: 4e-85; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 22804766 - 22804552
Alignment:
Q  9 ttgtaagactaaacataaaaactgcaataaatctactataaacactagtcatcattacctaagaaccatagatatcattacctaggactctt--acttac 106  Q
    |||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||    
T  22804766 ttgtaagactaaacataaaatctgcattaaatctactctaaacactagtcatcattacctaagaaccatagacatcattacctaggactcttttacttac 22804667  T
Q  107 caaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatcatgacagaaaataacaacacaattaattattaaatcagaaaaat 206  Q
    |||||||||| |||||||| |||| |||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||| |||||||||    
T  22804666 caaataagcagcaatctaattatggcacttaaacttaaacaagcaacgcattaattatgagagaaaataacaacacaattaattattaaaccagaaaaat 22804567  T
Q  207 atcaatctccaacaa 221  Q
    |||||||||||||||    
T  22804566 atcaatctccaacaa 22804552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 20 - 173
Target Start/End: Original strand, 7230964 - 7231118
Alignment:
Q  20 aacataaaaactgcaataaatctactataaacactagtcatcattacctaagaaccatagatatcattaccta-ggact--cttacttaccaaataagca 116  Q
    ||||||||| ||||| ||||||| || ||||||||||||||||||||||| |||||||||| ||||||||||| |||||   |||||||| |||||||||    
T  7230964 aacataaaatctgcactaaatctgctctaaacactagtcatcattacctaggaaccatagacatcattacctacggactactttacttactaaataagca 7231063  T
Q  117 acaatctaactatgacacttaaacttaaacaagcaacacattaatcatgacagaaaa 173  Q
     |||||||| |||||||||  |||||||||||||||||   |||| |||||||||||    
T  7231064 gcaatctaattatgacact--aacttaaacaagcaacaatctaattatgacagaaaa 7231118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 220
Target Start/End: Complemental strand, 44640179 - 44640115
Alignment:
Q  158 taatcatgacagaaaat-aacaacacaattaatt-attaaatcagaaaaatatcaatctccaaca 220  Q
    |||| |||||||||||  |||||||||| | ||| |||||| |||||||||||||||||||||||    
T  44640179 taattatgacagaaaaacaacaacacaaatcatttattaaaccagaaaaatatcaatctccaaca 44640115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 36 - 178
Target Start/End: Complemental strand, 6723591 - 6723446
Alignment:
Q  36 taaatctactataaacactagtcatcattacctaagaaccatagatatcattaccta-ggac--tcttacttaccaaataagcaacaatctaactatgac 132  Q
    |||||||||| ||||||| |||||||||||||||||||| ||| | || || ||||| ||||  | |||||||| |||||||||||||||||| ||||||    
T  6723591 taaatctactctaaacacgagtcatcattacctaagaacaataaacattatcacctagggactgttttacttactaaataagcaacaatctaattatgac 6723492  T
Q  133 acttaaacttaaacaagcaacacattaatcatgacagaaaataaca 178  Q
    ||||| ||||||||||||||||| ||||| ||||||||||| ||||    
T  6723491 acttacacttaaacaagcaacactttaattatgacagaaaacaaca 6723446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 13111097 - 13111321
Alignment:
Q  1 aagcatgcttgtaagactaaacataaaaactgcaataaatctactataaa-cactagtcatcattacctaagaaccatagatatcattacctagg-actc 98  Q
    |||| ||||||||||| | | |||||||  |||| |||||||||| | || |||||||||||||||||||||||| ||||| || |||||||||| |||     
T  13111097 aagcttgcttgtaagagtgagcataaaatttgcactaaatctactcttaagcactagtcatcattacctaagaacaatagacattattacctagggacta 13111196  T
Q  99 tt--acttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatcatgacagaaaataaca-acacaattaattattaa 195  Q
    ||  |||||| |||||||||||||||||| |||| |||||  || |||||||||||||| ||||| ||||||||||| | ||   | || ||||||  ||    
T  13111197 ttttacttactaaataagcaacaatctaattatggcacttctacataaacaagcaacactttaattatgacagaaaacagcagtaaaaagtaattaacaa 13111296  T
Q  196 atcagaaaaatatcaatctccaaca 220  Q
    | |||||||||||||||||||||||    
T  13111297 aacagaaaaatatcaatctccaaca 13111321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 6 - 179
Target Start/End: Original strand, 13108809 - 13108986
Alignment:
Q  6 tgcttgtaagactaaacataaaaactgcaataaatctactataaa-cactagtcatcattacctaagaaccatagatatcattacctagg-actctt--a 101  Q
    ||||||||||||| || ||||||  ||   |||||||||| | || ||||||||||||||||| |||||| |||  |||||||||||||| ||| ||  |    
T  13108809 tgcttgtaagactgaatataaaatatgttctaaatctactcttaagcactagtcatcattacccaagaacaatatgtatcattacctagggactgtttta 13108908  T
Q  102 cttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatcatgacagaaaataacaa 179  Q
    ||||| |||||||||||||||||| ||||||||||| |  |||||||||||||| ||||| ||||||||||| |||||    
T  13108909 cttactaaataagcaacaatctaattatgacacttataaataaacaagcaacactttaattatgacagaaaacaacaa 13108986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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