View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1632_high_27 (Length: 375)
Name: NF1632_high_27
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1632_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 5398393 - 5398750
Alignment:
| Q |
1 |
ataagacgtgacatgttatgatgagaaaggttaaaataaaatctaacttttgagtgaaaatatatttgacagacccatcacaggagcatcaatgaatcca |
100 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5398393 |
ataatacgtgacatgttattatgagaaaggttaaaataaaatctaacttgtgagtgaaaatatatttgacagacccatcacaggagcatcaatgaatcca |
5398492 |
T |
|
| Q |
101 |
gcaagaagcttaggaccagctattgtgcaccatgaatatagaggaatatggatatatatggtgtcacctattctaggagctttggctggtacatggacct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5398493 |
gcaagaagcttaggaccagctattgtgcaccatgaatatagaggaatatggatatatatggtgtcacctattctaggagctttggctggtacatggacct |
5398592 |
T |
|
| Q |
201 |
acactttcctcagaatcacaaataagccagttcgtgagctcaccaagagttcttcattcctcaaagcagtaagcaagggagctgagtgattgattataaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5398593 |
acactttcctcagaatcacaaataagccagttcgtgagctcaccaagagttcttcattcctcaaagcagtaagcaagggagctgag----tgattataaa |
5398688 |
T |
|
| Q |
301 |
tgtgtcacatgaatgtcaacacaatttaatttaaaatattaaatgtttaagaaactatatat |
362 |
Q |
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| T |
5398689 |
tgtgtcgcatgaatgtcaacacaatttaatttaaaatattaaatgtttaagaaactatatat |
5398750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 5406731 - 5406471
Alignment:
| Q |
1 |
ataagacgtgacatgttatgatgagaaaggttaaaataaaatctaacttttgagtgaaaatatatttgacagacccatcacaggagcatcaatgaatcca |
100 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5406731 |
ataatacgtgacatgttattatgagaaaggttaaaataaaatctaacttgtgagtgaaaatatatttgacagacccatcacaggagcatcaatgaatcca |
5406632 |
T |
|
| Q |
101 |
gcaagaagcttaggaccagctattgtgcaccatgaatatagaggaatatggatatatatggtgtcacctattctaggagctttggctggtacatggacct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5406631 |
gcaagaagcttaggaccagctattgtgcaccatgaatatagaggaatatggatatatatggtgtcacctattctaggagctttggctagtacatggacct |
5406532 |
T |
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| Q |
201 |
acactttcctcagaatcacaaataagccagttcgtgagctcaccaagagttcttcattcct |
261 |
Q |
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| T |
5406531 |
acactttcctcagaatcacaaataagtcagttcgtgagctcaccaagagttcttcattcct |
5406471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 83 - 162
Target Start/End: Original strand, 5390871 - 5390950
Alignment:
| Q |
83 |
ggagcatcaatgaatccagcaagaagcttaggaccagctattgtgcaccatgaatatagaggaatatggatatatatggt |
162 |
Q |
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| T |
5390871 |
ggagcatcaatgaatcctgcaaggagcttagggcctgctattgtgcaccatgaatatagaggaatatggatatatttggt |
5390950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 83 - 162
Target Start/End: Original strand, 5404173 - 5404252
Alignment:
| Q |
83 |
ggagcatcaatgaatccagcaagaagcttaggaccagctattgtgcaccatgaatatagaggaatatggatatatatggt |
162 |
Q |
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| T |
5404173 |
ggagcatcaatgaatcctgcaaggagcttagggcctgctattgtgcaccatgaatatagaggaatatggatatatttggt |
5404252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 54 - 213
Target Start/End: Original strand, 5416422 - 5416581
Alignment:
| Q |
54 |
gtgaaaatatatttgacagacccatcacaggagcatcaatgaatccagcaagaagcttaggaccagctattgtgcaccatgaatatagaggaatatggat |
153 |
Q |
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|||||| ||||||| ||||||| || || |||||||| |||||||||||||| || |||||||| ||| || | || | | |||| |||| ||||||| |
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| T |
5416422 |
gtgaaattatattttacagaccaatgacgggagcatcgatgaatccagcaaggagtttaggacctgcttttttatacgacaattatacaggattatggat |
5416521 |
T |
|
| Q |
154 |
atatatggtgtcacctattctaggagctttggctggtacatggacctacactttcctcag |
213 |
Q |
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|||| || | |||| |||||||||||||||| ||||||||||| |||| |||| |||| |
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| T |
5416522 |
atatttgattgcaccaattctaggagctttggtaggtacatggacttacaatttcatcag |
5416581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 67 - 196
Target Start/End: Original strand, 36269149 - 36269278
Alignment:
| Q |
67 |
tgacagacccatcacaggagcatcaatgaatccagcaagaagcttaggaccagctattgtgcaccatgaatatagaggaatatggatatatatggtgtca |
166 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| ||||||| ||| || | ||| |||||| ||||||||||||||||| ||||||| |
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| T |
36269149 |
tgacagaccaatcacaggagcatcaatgaatccagcaagaagtataggacctgctcttctacacagtgaatacagaggaatatggatatacttggtgtct |
36269248 |
T |
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| Q |
167 |
cctattctaggagctttggctggtacatgg |
196 |
Q |
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|||||||| |||||| |||||||| ||||| |
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| T |
36269249 |
cctattcttggagctgtggctggtgcatgg |
36269278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 157
Target Start/End: Original strand, 36263707 - 36263753
Alignment:
| Q |
111 |
taggaccagctattgtgcaccatgaatatagaggaatatggatatat |
157 |
Q |
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| T |
36263707 |
taggaccagcttttgtacacaatgagtatagaggaatatggatatat |
36263753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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