View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1632_high_28 (Length: 370)
Name: NF1632_high_28
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1632_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 51310149 - 51310502
Alignment:
| Q |
1 |
aacaatcttcttcgcacttcctcttcaatttacgttaaacgcagagcttctgaatctatggttagtggtttgtgtgcaatggataagcctcgtgaggctg |
100 |
Q |
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| T |
51310149 |
aacaatcttcttcgcacttcctcttcaatttacgttaaacgcagagcttctgaatctatggttagtggtttgtgtgcaatggataagcctcgtgaggctg |
51310248 |
T |
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| Q |
101 |
agaatttggttcaggaatttaaacgaacagatggtggtgggaagattcagcttcaaccttctgcttttgaattcaagtctattttgtatggatatggaag |
200 |
Q |
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| T |
51310249 |
agaatctggttcaggaatttaaacgaacagatggtggtgggaagattcagcttcaaccttctgcttttgaattcaagtctattttgtatggatatggaat |
51310348 |
T |
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| Q |
201 |
attgggtttgtttaatgatttgaacagagttgttgatgaaatggagaataatgggtttgttattgatactgtttgttataatatggttctttcaagtttt |
300 |
Q |
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| T |
51310349 |
attgggtttgtttaatga-ttgaacagagttgttgatgaaatggagaataatgggtttgttattgatactgtttgttataatatggttctttcaagtttt |
51310447 |
T |
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| Q |
301 |
ggaattcatggggagtatgtggaaatggtttcttggcttacaaggatgaggaatt |
355 |
Q |
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| T |
51310448 |
ggaattcatggggagtatgtggaaatggtttcttggcttacaaggatgaggaatt |
51310502 |
T |
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