View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1632_high_33 (Length: 350)
Name: NF1632_high_33
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1632_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 34779429 - 34779577
Alignment:
| Q |
7 |
catcctttccatttatttcaaccaattacattttgccaagtgtatgttctaatgtactattttgaatcacaacaacgtagttatatatgtttctc----- |
101 |
Q |
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| T |
34779429 |
catcctttccatttatttcaaccaattacattttgccaagtgtatgttctaatgtactattttgaatcacaacaacgtagttatatatgtttctctagtt |
34779528 |
T |
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| Q |
102 |
gagtttgtaaatcctccttatgctaggttaaactgttggtctaaagaaa |
150 |
Q |
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| T |
34779529 |
gagtttgtaaatcctccttatgctaggttaaactgttggtctaaagaaa |
34779577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 206 - 337
Target Start/End: Original strand, 34779633 - 34779764
Alignment:
| Q |
206 |
aaagatctcacaataaaaattgttttagacctctaaacatgttgggtcggccctatccacacgccaccgtacttgacaccagattatatttgtgcgagaa |
305 |
Q |
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| T |
34779633 |
aaagatctcacaataaaaattgttttagacctctaaacatgttgggtcggccctatccacacgccaccgtacttgacactagattatatttgtgcgagaa |
34779732 |
T |
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| Q |
306 |
cacctcaaaccacaatccacactgttcatctc |
337 |
Q |
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| T |
34779733 |
cacctcaaaccacaatccacactgctcatctc |
34779764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 12900769 - 12900713
Alignment:
| Q |
24 |
tcaaccaattacattttgccaagtgtatgttctaatgtactattttgaatcacaaca |
80 |
Q |
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| T |
12900769 |
tcaaccaattacattttgccaagtgtattttctcatgtgctatcttgaatcataaca |
12900713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 42048933 - 42048901
Alignment:
| Q |
24 |
tcaaccaattacattttgccaagtgtatgttct |
56 |
Q |
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| T |
42048933 |
tcaaccaattacattttgccaagtgtattttct |
42048901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 30063045 - 30062980
Alignment:
| Q |
14 |
tccatttatttcaaccaattacattttgccaagtgtatgttctaatgtactattttgaatcacaaca |
80 |
Q |
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| T |
30063045 |
tccatttacctcaaccaattacattttgccaagtgtattttctcatgtgcta-tttgaatcacaaca |
30062980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 10086131 - 10086065
Alignment:
| Q |
14 |
tccatttatttcaaccaattacattttgccaagtgtatgttctaatgtactattttgaatcacaaca |
80 |
Q |
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| T |
10086131 |
tccatttatctcaaccaattatatttttcaatgtgtattttctcatgtgctattttgaatcataaca |
10086065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 23406574 - 23406518
Alignment:
| Q |
24 |
tcaaccaattacattttgccaagtgtatgttctaatgtactattttgaatcacaaca |
80 |
Q |
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| T |
23406574 |
tcaaccaattacatttttccaagtgtattttctcatgtgctattttgaatcataaca |
23406518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 49272578 - 49272539
Alignment:
| Q |
14 |
tccatttatttcaaccaattacattttgccaagtgtatgt |
53 |
Q |
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| T |
49272578 |
tccatttacctcaaccaattacattttgccaagtgtatgt |
49272539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 7712280 - 7712320
Alignment:
| Q |
217 |
aataaaaattgttttagacctctaaacatgttgggtcggcc |
257 |
Q |
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| T |
7712280 |
aataaaaattgttttagacctctcaacctgttgggtcggcc |
7712320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 254
Target Start/End: Original strand, 40932272 - 40932316
Alignment:
| Q |
210 |
atctcacaataaaaattgttttagacctctaaacatgttgggtcg |
254 |
Q |
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| T |
40932272 |
atctcacaatagaaatcgttttacacctctaaacatgtttggtcg |
40932316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 11183936 - 11183882
Alignment:
| Q |
26 |
aaccaattacattttgccaagtgtatgttctaatgtactattttgaatcacaaca |
80 |
Q |
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|||||||||||||||||||||||||| |||| || | |||||| |||||| |||| |
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| T |
11183936 |
aaccaattacattttgccaagtgtattttctcatatgctatttagaatcataaca |
11183882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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