View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1632_high_37 (Length: 314)

Name: NF1632_high_37
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1632_high_37
NF1632_high_37
[»] chr4 (2 HSPs)
chr4 (154-299)||(32698864-32699009)
chr4 (15-49)||(32698725-32698759)
[»] chr7 (2 HSPs)
chr7 (154-300)||(5611040-5611185)
chr7 (15-49)||(5610903-5610937)
[»] chr6 (3 HSPs)
chr6 (172-237)||(1171120-1171185)
chr6 (167-235)||(20391897-20391965)
chr6 (256-300)||(1171335-1171380)


Alignment Details
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 154 - 299
Target Start/End: Original strand, 32698864 - 32699009
Alignment:
Q  154 caacaaacatgtaggtttgggatgaatttgctgtgttaaattgagtttagcttgaagaagaaaggttgaagcttggattggtgtagttttgaggaaaatg 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  32698864 caacaaacatgtaggtttgggatgaatttgctgtgttaaattgagtttagcttgaagaagaaaggttgaagcttggattggtgtagttttgaggaagatg 32698963  T
Q  254 gatgtgtgtgttagaaatgtagatccagatttatgaattaaaattt 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  32698964 gatgtgtgtgttagaaatgtagatccagatttatgaattaaaattt 32699009  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 32698725 - 32698759
Alignment:
Q  15 gttttcccataattttgttttctagaaattcgatt 49  Q
    |||||||||||||||||||||||||||||||||||    
T  32698725 gttttcccataattttgttttctagaaattcgatt 32698759  T

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Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 154 - 300
Target Start/End: Original strand, 5611040 - 5611185
Alignment:
Q  154 caacaaacatgtaggtttgggatgaatttgctgtgttaaattgagtttagcttgaagaagaaaggttgaagcttggattggtgtagttttgaggaaaatg 253  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||     
T  5611040 caacaaacatgaaggtttgggatgaatttgctgtgttaaattgagtttagcttgaagaagaaaggttgaagcttagattggtgtggttttgaggaagat- 5611138  T
Q  254 gatgtgtgtgttagaaatgtagatccagatttatgaattaaaatttg 300  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||    
T  5611139 gatgtgtgtgttagaaatgtagatccaaatttgtgaattaaaatttg 5611185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 5610903 - 5610937
Alignment:
Q  15 gttttcccataattttgttttctagaaattcgatt 49  Q
    ||||| |||||||||||||||||||||||||||||    
T  5610903 gtttttccataattttgttttctagaaattcgatt 5610937  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 1171120 - 1171185
Alignment:
Q  172 gggatgaatttgctgtgttaaattgagtttagcttgaagaagaaaggttgaagcttggattggtgt 237  Q
    |||||||||||| |||||| | |||||||||||||||||||||||||| |||| ||||||||||||    
T  1171120 gggatgaatttgttgtgttgatttgagtttagcttgaagaagaaaggtagaaggttggattggtgt 1171185  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 235
Target Start/End: Original strand, 20391897 - 20391965
Alignment:
Q  167 ggtttgggatgaatttgctgtgttaaattgagtttagcttgaagaagaaaggttgaagcttggattggt 235  Q
    ||||||||||||||||| |||||| | |||||||||| |||| ||||||||| ||||| ||||||||||    
T  20391897 ggtttgggatgaatttgttgtgttgatttgagtttaggttgatgaagaaaggctgaaggttggattggt 20391965  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 300
Target Start/End: Original strand, 1171335 - 1171380
Alignment:
Q  256 tgtgtgtgttagaaa-tgtagatccagatttatgaattaaaatttg 300  Q
    ||||||||||||| | |||||||||| |||||||||||||||||||    
T  1171335 tgtgtgtgttagagactgtagatccaaatttatgaattaaaatttg 1171380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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