View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1632_high_38 (Length: 309)
Name: NF1632_high_38
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1632_high_38 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 43533722 - 43534019
Alignment:
| Q |
1 |
aaaatacaactacataaatggcgaggtgttcaaatacagcaaaagacttcattttctacgtggaaaacaaatatgagctacacaattatnnnnnnnnngt |
100 |
Q |
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| T |
43533722 |
aaaatacaactacataaatggcgaggtgttcaaatacagcaaaagact-cattttctacgtggaaaacaaatatgagctacacaatta-aaaaaaaaagt |
43533819 |
T |
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| Q |
101 |
aaaatgaataaataataaccctactcacataactttgaattgaatatataaattgattcatatctttatcttttttaaaatatatatgcaaataaggtac |
200 |
Q |
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| T |
43533820 |
aaaatgaataaataataaccctactcacataactttgaattgaatatataaattgactcatatctttatattttttaaaatatatatgcaaataaggtac |
43533919 |
T |
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| Q |
201 |
aacaatcccttatcaaggatcgacttaagctcgcaatgacattacacgctttatttagtttgctatgagatttgtcaccaagataatcactcaagaataa |
300 |
Q |
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| T |
43533920 |
aacaatcccttatcaaggatcgacttaagctcgcaatgacattacacgctttatttagtttgctatgagatttgtcaccaagataatcactcaagaataa |
43534019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 301
Target Start/End: Original strand, 43531668 - 43531730
Alignment:
| Q |
239 |
acattacacgctttatttagtttgctatgagatttgtcaccaagataatcactcaagaataat |
301 |
Q |
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| T |
43531668 |
acattacacactttatttagttcactatgtgatttgtccccaagataatcacttgagaataat |
43531730 |
T |
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