View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1632_high_4 (Length: 556)
Name: NF1632_high_4
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1632_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 80 - 542
Target Start/End: Complemental strand, 42579402 - 42578943
Alignment:
| Q |
80 |
tgataaaaacattaaaatagagatttaactgagaaatgtttgttaaagacacggattagtttaaatatttaataaaatcggaaactaatacaaaagtggt |
179 |
Q |
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| T |
42579402 |
tgataaaaacattaaaatagagatttaactgagaaatgtttgttaaagacacggattagtttaaatatttaataaaatcggaaactaatacaaaagtggt |
42579303 |
T |
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| Q |
180 |
ttagaaatatgataaagttgatagtttattaaaatatctatttcccgaccaagacgcaactgaagaagaagaataagaccaaacatgcttgtttttgttg |
279 |
Q |
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| T |
42579302 |
ttagaaatatgatgaagttgatagtttattcaaatatctatttcccgaccaagacgcaactgaagaagaagaataagaccaaacatgcttttttttgttg |
42579203 |
T |
|
| Q |
280 |
ttcccataataat---aatattatgaagtttcttgtnnnnnnnncaagaaatacccatttaaatgagtcagaaactagtcttagttcaatgtgcaaatcg |
376 |
Q |
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| T |
42579202 |
ttcccataataataataatattatgaagtttcttgtaaaaaaaacaagaaatacccatttaaatgagtcagaaactactgttagttcgatgtgcaaatcg |
42579103 |
T |
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| Q |
377 |
aaaaagagcaccaccgtggtgcaacccacaaccagaaacaaccctcacccacaacggacctcaacaacaacatcttcatcctcaaatctcccatcatctt |
476 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42579102 |
aaaaagagcaccaccgtggtgcaacccacaaccagaaacaaccctcacccacaacggacct---caacaacatcttcatcctcaaatctcccatcatctt |
42579006 |
T |
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| Q |
477 |
caaccagcgaagttccaatcacagaatcaagaagttacatatacaacaacaactcaaagcaaaaac |
542 |
Q |
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| T |
42579005 |
caaccagcgaagttccaatcacagaatcaagaagttacatat---acaacaactcaaagcaaaaac |
42578943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 42579464 - 42579431
Alignment:
| Q |
11 |
tattaatctttgcatctgaaagtactctcaaaat |
44 |
Q |
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| T |
42579464 |
tattaatctttgcatctgaaagtactctcaaaat |
42579431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 485 - 534
Target Start/End: Original strand, 35016124 - 35016173
Alignment:
| Q |
485 |
gaagttccaatcacagaatcaagaagttacatatacaacaacaactcaaa |
534 |
Q |
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| T |
35016124 |
gaagttccaatcacataatcaagaagttacttataaaacaacaactcaaa |
35016173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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