View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1632_high_41 (Length: 297)
Name: NF1632_high_41
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1632_high_41 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 50117890 - 50118175
Alignment:
| Q |
1 |
caaatggtttccctataactaaaggattgcatgaaaagtgaactttttcaatttatctatggtagaaaatttaaaatctgatgtaaaatttaaaccgcct |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50117890 |
caaatggtttccctataactaaaggtttgcatgaaaagtgaactttttcgatttatctatggtagaaaatttaaaatctgatgtaaaatttaaaccgcct |
50117989 |
T |
|
| Q |
101 |
gattttgattgaatatggtagaaagtatggaagaatatggtggattggttgtagccgcagcaatacaacattggctttggattagttataactcttctat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
50117990 |
gattttgattgaatatggtagaaagtatggaagaatatggtggattggttgtagccgcagcaatacaacaatggctttggattagttataactcttctat |
50118089 |
T |
|
| Q |
201 |
ggttcaaatattagaaattctgaggnnnnnnnnnnnnnnnnnnnnaatttccatctcaatccttagtgctgacattgtatttgatg |
286 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50118090 |
ggttcaaatattagaaattctgaggttttttttggggggagggggaatttccatctcaatccttagtgctgacattgtatttgatg |
50118175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University