View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1632_high_47 (Length: 262)

Name: NF1632_high_47
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1632_high_47
NF1632_high_47
[»] chr8 (2 HSPs)
chr8 (15-147)||(44734274-44734406)
chr8 (15-142)||(44731963-44732090)
[»] chr3 (6 HSPs)
chr3 (15-147)||(28784635-28784767)
chr3 (15-147)||(48707585-48707717)
chr3 (15-115)||(48023922-48024022)
chr3 (15-98)||(5354551-5354634)
chr3 (90-147)||(5353449-5353506)
chr3 (15-140)||(5913494-5913618)
[»] chr5 (2 HSPs)
chr5 (15-147)||(32798128-32798260)
chr5 (15-147)||(32800440-32800572)
[»] chr2 (6 HSPs)
chr2 (15-147)||(45336381-45336513)
chr2 (15-147)||(45338693-45338825)
chr2 (15-147)||(17648993-17649125)
chr2 (15-147)||(14662453-14662584)
chr2 (15-121)||(1454048-1454155)
chr2 (15-109)||(132788-132882)
[»] chr1 (3 HSPs)
chr1 (15-147)||(9535377-9535509)
chr1 (15-147)||(1550278-1550411)
chr1 (50-115)||(47695724-47695789)
[»] chr4 (2 HSPs)
chr4 (15-146)||(22804733-22804864)
chr4 (15-121)||(7230881-7230986)
[»] chr7 (2 HSPs)
chr7 (15-147)||(13108714-13108845)
chr7 (15-147)||(13111006-13111138)
[»] chr6 (1 HSPs)
chr6 (32-140)||(6723604-6723711)


Alignment Details
Target: chr8 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 15 - 147
Target Start/End: Original strand, 44734274 - 44734406
Alignment:
15 agatttagtgcagattttatgtttagtcttacaagcaagcttatggcttgactctatatatttgtagtgtatgcttaagtttaatgtattaaagtatctt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
44734274 agatttagtgcagattttatgtttagtcttacaagcaagcttatggcttgactctatatatttgtagtgtatgcttaagtttaatgtatcaaagtatctt 44734373  T
115 agcttttagtactttgttcacaaaacattgttg 147  Q
    |||||||||||||||||||||||||||||||||    
44734374 agcttttagtactttgttcacaaaacattgttg 44734406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 15 - 142
Target Start/End: Original strand, 44731963 - 44732090
Alignment:
15 agatttagtgcagattttatgtttagtcttacaagcaagcttatggcttgactctatatatttgtagtgtatgcttaagtttaatgtattaaagtatctt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
44731963 agatttagtgcagattttatgtttagtcttacaagcaagcttatggcttgactctatatatttgtagtgtatgcttaagtttaatgtatcaaagtatctt 44732062  T
115 agcttttagtactttgttcacaaaacat 142  Q
    ||||||||||||||| ||||||||||||    
44732063 agcttttagtacttttttcacaaaacat 44732090  T

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Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 15 - 147
Target Start/End: Original strand, 28784635 - 28784767
Alignment:
15 agatttagtgcagattttatgtttagtcttacaagcaagcttatggcttgactctatatatttgtagtgtatgcttaagtttaatgtattaaagtatctt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
28784635 agatttagtgcagattttatgtttagtcttacaagcaagcttatggcttgattctatatatttgtagtgtatgcttaagtttaatgtatcaaagtatctt 28784734  T
115 agcttttagtactttgttcacaaaacattgttg 147  Q
    |||||||||||||||||||||||||||||||||    
28784735 agcttttagtactttgttcacaaaacattgttg 28784767  T

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Target: chr3; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 15 - 147
Target Start/End: Complemental strand, 48707717 - 48707585
Alignment:
15 agatttagtgcagattttatgtttagtcttacaagcaagcttatggcttgactctatatatttgtagtgtatgcttaagtttaatgtattaaagtatctt 114  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||    
48707717 agatttagtgtagattttatgtttagtcttacaagcaagcttatggcttgactctatatatttgtagtgtatgcttaaatttaacgtatcaaagtatctt 48707618  T
115 agcttttagtactttgttcacaaaacattgttg 147  Q
    ||||||||||||||||||||||||| |||||||    
48707617 agcttttagtactttgttcacaaaatattgttg 48707585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 48024022 - 48023922
Alignment:
15 agatttagtgcagattttatgtttagtcttacaagcaagcttatggcttgactctatatatttgtagtgtatgcttaagtttaatgtattaaagtatctt 114  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
48024022 agatttagtgcagattttatgttcagtcttacaagcaagcttatggcttgactctatatatttgtagtgtatgcttcagtttaatgtataaaagtatctt 48023923  T
115 a 115  Q
    |    
48023922 a 48023922  T

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Target: chr3; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 5354634 - 5354551
Alignment:
15 agatttagtgcagattttatgtttagtcttacaagcaagcttatggcttgactctatatatttgtagtgtatgcttaagtttaa 98  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
5354634 agatttagtgcagattttatgtttagtcttacaagtaagcttatggcttggctctatatatttgtagtgtatgcttaagtttaa 5354551  T

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Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 90 - 147
Target Start/End: Complemental strand, 5353506 - 5353449
Alignment:
90 taagtttaatgtattaaagtatcttagcttttagtactttgttcacaaaacattgttg 147  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
5353506 taagtttaatgtatcaaagtatcttagcttttagtactttgttcacaaaacattgttg 5353449  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 140
Target Start/End: Original strand, 5913494 - 5913618
Alignment:
15 agatttagtgcagattttatgtttagtcttacaagcaagcttatggcttgactctatatatttgtagtgtatgcttaagtttaatgtattaaagtatctt 114  Q
    ||||||| ||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||   ||||| |  |  ||||||||| |||||||||     
5913494 agatttaatgcagattttatgttcaatcttacaagcaagcttatggtttgactctatatatttgttaagtatgatacaacttaatgtatcaaagtatctc 5913593  T
115 agcttttagtactttgttcacaaaac 140  Q
    | |||||  |||||||||| ||||||    
5913594 aactttt-ttactttgttctcaaaac 5913618  T

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Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 15 - 147
Target Start/End: Original strand, 32798128 - 32798260
Alignment:
15 agatttagtgcagattttatgtttagtcttacaagcaagcttatggcttgactctatatatttgtagtgtatgcttaagtttaatgtattaaagtatctt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||    
32798128 agatttagtgcagattttatgtttagtcttacaagcaagcttatggcttggctctatatatttgtattgtatgcttaagtttaatgtatcaaagtatctt 32798227  T
115 agcttttagtactttgttcacaaaacattgttg 147  Q
    |||||||||||||||||||||||||||||||||    
32798228 agcttttagtactttgttcacaaaacattgttg 32798260  T

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Target: chr5; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 15 - 147
Target Start/End: Original strand, 32800440 - 32800572
Alignment:
15 agatttagtgcagattttatgtttagtcttacaagcaagcttatggcttgactctatatatttgtagtgtatgcttaagtttaatgtattaaagtatctt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||    
32800440 agatttagtgcagattttatgtttagtcttacaagcaagcttatggcttggctctatatatttgtattgtatgcttaagtttaatgtatcaaagtatctt 32800539  T
115 agcttttagtactttgttcacaaaacattgttg 147  Q
    |||||||||||||||||||||||||||||||||    
32800540 agcttttagtactttgttcacaaaacattgttg 32800572  T

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Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 15 - 147
Target Start/End: Original strand, 45336381 - 45336513
Alignment:
15 agatttagtgcagattttatgtttagtcttacaagcaagcttatggcttgactctatatatttgtagtgtatgcttaagtttaatgtattaaagtatctt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||    
45336381 agatttagtgcagattttatgtttagtcttacaagcaagcttatggcttggctctatatatttgtattgtatgcttaagtttaatgtatcaaagtatctt 45336480  T
115 agcttttagtactttgttcacaaaacattgttg 147  Q
    |||||||||||||||||||||||||||||||||    
45336481 agcttttagtactttgttcacaaaacattgttg 45336513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 15 - 147
Target Start/End: Original strand, 45338693 - 45338825
Alignment:
15 agatttagtgcagattttatgtttagtcttacaagcaagcttatggcttgactctatatatttgtagtgtatgcttaagtttaatgtattaaagtatctt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||    
45338693 agatttagtgcagattttatgtttagtcttacaagcaagcttatggcttggctctatatatttgtattgtatgcttaagtttaatgtatcaaagtatctt 45338792  T
115 agcttttagtactttgttcacaaaacattgttg 147  Q
    |||||||||||||||||||||||||||||||||    
45338793 agcttttagtactttgttcacaaaacattgttg 45338825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 147
Target Start/End: Original strand, 17648993 - 17649125
Alignment:
15 agatttagtgcagattttatgtttagtcttacaagcaagcttatggcttgactctatatatttgtagtgtatgcttaagtttaatgtattaaagtatctt 114  Q
    |||||||||||| |||||||||| | |||||||||||||||||||||||| ||||||||||||||  ||||||||| || | ||||||| ||||||||||    
17648993 agatttagtgcatattttatgttcaatcttacaagcaagcttatggcttggctctatatatttgttatgtatgcttcagctaaatgtatcaaagtatctt 17649092  T
115 agcttttagtactttgttcacaaaacattgttg 147  Q
    || ||||  ||||||||||||||||||||||||    
17649093 agttttttttactttgttcacaaaacattgttg 17649125  T

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Target: chr2; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 15 - 147
Target Start/End: Original strand, 14662453 - 14662584
Alignment:
15 agatttagtgcagattttatgtttagtcttacaagcaagcttatggcttgactctatatatttgtagtgtatgcttaagtttaatgtattaaagtatctt 114  Q
    |||||| |||||||| ||||||| ||| ||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||    
14662453 agatttcgtgcagatcttatgttcagttttacaagcaagtttatggcttggctctatatatttgtagtgtatgcttcagtttaatgtatcaaagtatctt 14662552  T
115 agcttttagtactttgttcacaaaacattgttg 147  Q
    || ||||  ||||||||||  ||||||||||||    
14662553 ag-tttttttactttgttcctaaaacattgttg 14662584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 1454048 - 1454155
Alignment:
15 agatttagtgcaga-ttttatgtttagtcttacaagcaagcttatggcttgactctatatatttgtagtgtatgcttaagtttaatgtattaaagtatct 113  Q
    ||||||| |||||| |||||| || | | ||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||    
1454048 agatttactgcagagttttattttcaattttacaagaaagcttatggcttggctctatatatttgtagtgtatgcttcagtttaatgtatcaaagtatct 1454147  T
114 tagctttt 121  Q
    ||| ||||    
1454148 tagatttt 1454155  T

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Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 132788 - 132882
Alignment:
15 agatttagtgcagattttatgtttagtcttacaagcaagcttatggcttgactctatatatttgtagtgtatgcttaagtttaatgtattaaagt 109  Q
    ||||||| ||||||||| || || ||||||||| |||  ||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||    
132788 agatttattgcagatttgattttcagtcttacaggcagacttatggcttgcctctatatatttgtagtgtatgcttcagtttgatgtattaaagt 132882  T

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Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 15 - 147
Target Start/End: Original strand, 9535377 - 9535509
Alignment:
15 agatttagtgcagattttatgtttagtcttacaagcaagcttatggcttgactctatatatttgtagtgtatgcttaagtttaatgtattaaagtatctt 114  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
9535377 agatttagtgtagattttatgtttagtcttacaagcaagtttatggcttgactctatatatttgtagtgtatgtttaagtttaatgtatcaaagtatctt 9535476  T
115 agcttttagtactttgttcacaaaacattgttg 147  Q
    |||||||||||||||||||||||||||||||||    
9535477 agcttttagtactttgttcacaaaacattgttg 9535509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 15 - 147
Target Start/End: Original strand, 1550278 - 1550411
Alignment:
15 agatttagtgcagattttatgtttagtcttacaagcaagcttatggcttgactctatatatttgtagtgtatgcttaagtttaatgtattaaagtatctt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||    
1550278 agatttagtgcagattttatgtttagtcttacaagcaagcttatggcttggctctatatatttgtaatgtatgcttaagtttaatgtatcaaagtatctt 1550377  T
115 agc-ttttagtactttgttcacaaaacattgttg 147  Q
    ||| ||||||||||||||||||||||||||||||    
1550378 agctttttagtactttgttcacaaaacattgttg 1550411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 47695789 - 47695724
Alignment:
50 caagcttatggcttgactctatatatttgtagtgtatgcttaagtttaatgtattaaagtatctta 115  Q
    |||| ||| |||| ||||| ||||||||| ||||||||||| |||||||||||| ||| |||||||    
47695789 caagtttacggctggactccatatatttgcagtgtatgctttagtttaatgtatcaaattatctta 47695724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 15 - 146
Target Start/End: Original strand, 22804733 - 22804864
Alignment:
15 agatttagtgcagattttatgtttagtcttacaagcaagcttatggcttgactctatatatttgtagtgtatgcttaagtttaatgtattaaagtatctt 114  Q
    ||||||| |||||||||||||||||||||||||| ||  ||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||    
22804733 agatttaatgcagattttatgtttagtcttacaaacagacttatggcttggctctatatatttgtagtgtatgtttaagtttaatgtatcaaagtatctt 22804832  T
115 agcttttagtactttgttcacaaaacattgtt 146  Q
    | ||||||||||||| ||||||||| ||||||    
22804833 aacttttagtacttttttcacaaaatattgtt 22804864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 7230986 - 7230881
Alignment:
15 agatttagtgcagattttatgtttagtcttacaagcaagcttatggcttgactctatatatttgtagtgtatgcttaagtttaatgtattaaagtatctt 114  Q
    ||||||||||||||||||||||| | |||| |||| ||| |||||||||| |||||||| |||||  ||||||||| |  ||||||| | ||||||||||    
7230986 agatttagtgcagattttatgttcaatcttccaagaaagtttatggcttggctctatat-tttgttatgtatgctttaacttaatgtgtcaaagtatctt 7230888  T
115 agctttt 121  Q
    |||||||    
7230887 agctttt 7230881  T

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Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 147
Target Start/End: Complemental strand, 13108845 - 13108714
Alignment:
15 agatttagtgcagattttatgtttagtcttacaagcaagcttatggcttgactctatatatttgtagtgtatgcttaagtttaatgtattaaagtatctt 114  Q
    ||||||||  || ||||||| || |||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||    
13108845 agatttagaacatattttatattcagtcttacaagcaaacttatggcttgactccatatatttgtagtgtatgcttcagtttaatgtatcaaagtatctt 13108746  T
115 agcttttagtactttgttcacaaaacattgttg 147  Q
    |||||||  ||||||||||||||||||||||||    
13108745 agctttt-ttactttgttcacaaaacattgttg 13108714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 147
Target Start/End: Complemental strand, 13111138 - 13111006
Alignment:
15 agatttagtgcagattttatgtttagtcttacaagcaagcttatggcttgactctatatatttgtagtgtatgcttaagtttaatgtattaaagtatctt 114  Q
    |||||||||||| |||||||| | | |||||||||||||||||||||||| ||| ||||||||||| | ||||||| |||||||||||| ||| ||| ||    
13111138 agatttagtgcaaattttatgctcactcttacaagcaagcttatggcttggctcaatatatttgtattttatgcttcagtttaatgtatcaaaatatttt 13111039  T
115 agcttttagtactttgttcacaaaacattgttg 147  Q
    || ||||| |||||||||||||||| |||||||    
13111038 agtttttattactttgttcacaaaatattgttg 13111006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 6723604 - 6723711
Alignment:
32 tatgtttagtcttacaagcaagcttatggcttgactctatatatttgtagtgtatgcttaagtttaatgtattaaagtatcttagcttttagtactttgt 131  Q
    |||||| |||||||||| ||| |||||| |||| |||||||||||| ||||||||| || |||||||||||| ||| ||||||||| ||| |||||||||    
6723604 tatgttgagtcttacaaacaaacttatgacttggctctatatatttatagtgtatgatttagtttaatgtatcaaaatatcttagcattt-gtactttgt 6723702  T
132 tcacaaaac 140  Q
    || ||||||    
6723703 tctcaaaac 6723711  T

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