View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1632_high_53 (Length: 247)
Name: NF1632_high_53
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1632_high_53 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 4 - 247
Target Start/End: Original strand, 48121083 - 48121326
Alignment:
| Q |
4 |
ctaaattatacttcaatcagtttatattttatcttccaataaagtatattacaagtgtgctatgtatttctcaaatgcgcatgagcaccatataaatttt |
103 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
48121083 |
ctaaattacacttcaatcagtttatattttatcttccaataaagtatattacaagtgtgctatgtatttctcaaatgtgcatgagcaccatataaatttt |
48121182 |
T |
|
| Q |
104 |
attcaatttcaatatatatatttatagtccaccaagttaagactgtttgatgtaattacgatgatggagttgtctttcatagacaatccaaaataccaag |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48121183 |
attcaatttcaatatatatatttatagtccaccaagttaagactgtttgatgtaattacgatgatggagttgtctttcatagacaatccaaaataccaag |
48121282 |
T |
|
| Q |
204 |
gacaacactgcagctacagataccacatttgatccccaataaat |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48121283 |
gacaacactgcagctacagataccacatttgatccccaataaat |
48121326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University