View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1632_high_54 (Length: 246)
Name: NF1632_high_54
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1632_high_54 |
 | |
|
| [»] scaffold0028 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 43533582 - 43533352
Alignment:
| Q |
1 |
caaatcttacggtaatggctaggnnnnnnnnntgcttagcagactatagttgtactgattatatatacaaataaactttgcgcaagaagtcatgaagttc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43533582 |
caaatcttacggtaatggctaggaaaaaaaaatgcttagcagactatagttgcactgattatatatacaaataaactttgcgcaagaagtcatgaagttc |
43533483 |
T |
|
| Q |
101 |
gtaatttatgaaacgaactactagatcgatcttaattagtgatcaagtagtttgcttgaaaaataactaagcctattaagagataaggcatctaattaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43533482 |
gtaatttatgaaacgaactactagatcgatcttaattagtgatcaagtagtttgcttgaaaaataactaagcctattaagagataaggcatctaattaac |
43533383 |
T |
|
| Q |
201 |
agacatcatgcaatatcatgaaagttcatac |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
43533382 |
agacatcatgcaatatcatgaaagttcatac |
43533352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 117 - 201
Target Start/End: Complemental strand, 43529200 - 43529116
Alignment:
| Q |
117 |
actactagatcgatcttaattagtgatcaagtagtttgcttgaaaaataactaagcctattaagagataaggcatctaattaaca |
201 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43529200 |
actactaggtcgatcttaattagtgatcaagtagtttgcttgaaaaataactaagcctattaagagataaggcatctaattaaca |
43529116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 43537924 - 43537860
Alignment:
| Q |
33 |
tgcttagcagactatagttgtactgattatatatacaaataaactttgcgcaagaagtcatgaag |
97 |
Q |
| |
|
||||||| ||||||||| ||||||||||||| | ||||||||||||||| |||| |||||||||| |
|
|
| T |
43537924 |
tgcttagtagactatagctgtactgattataaaaacaaataaactttgcacaagtagtcatgaag |
43537860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 43537855 - 43537796
Alignment:
| Q |
145 |
aagtagtttgcttgaaaaataactaagcctattaagagataaggcatctaattaacagacat |
206 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||| |||| |
|
|
| T |
43537855 |
aagtagtttgcttgaaaaa--actaagcctatcaagagataaggcatctgattaacaaacat |
43537796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 18829 - 18886
Alignment:
| Q |
129 |
atcttaattagtgatcaagtagtttgcttgaaaaataactaagcctattaagagataa |
186 |
Q |
| |
|
||||||| || | ||||| |||||||| | ||||||||||||||||||||| |||||| |
|
|
| T |
18829 |
atcttaactaattatcaactagtttgcattaaaaataactaagcctattaaaagataa |
18886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 22068418 - 22068475
Alignment:
| Q |
129 |
atcttaattagtgatcaagtagtttgcttgaaaaataactaagcctattaagagataa |
186 |
Q |
| |
|
||||||| || | ||||| |||||||| | ||||||||||||||||||||| |||||| |
|
|
| T |
22068418 |
atcttaactaattatcaactagtttgcattaaaaataactaagcctattaaaagataa |
22068475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University