View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1632_high_8 (Length: 515)
Name: NF1632_high_8
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1632_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Original strand, 4348210 - 4348680
Alignment:
| Q |
1 |
cactatattagataatatgagttacatgattatcaaatttatagaaaaactcaaaagatcaatagtatagttgaaatatctttagatccatcaaaaccaa |
100 |
Q |
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| T |
4348210 |
cactatattagataatatgagttacatgattatcaaatttatagaaaaactcaaaagatcaatagtatagttgaaatatctttagatccatcaaaaccac |
4348309 |
T |
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| Q |
101 |
atagaaaacaaatgtttcttatttttgtaatcttgaacaacccaaacacacaactcttacaaccaatatctataattgtttccttagagttatatcaaca |
200 |
Q |
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| T |
4348310 |
atagaaaacaaatgtttcttatttttgtaatctcgaacaacccaaacacacaactcttacaaccaatatctataattgtttccttagagttatatcaaca |
4348409 |
T |
|
| Q |
201 |
atgtaacttgcatatttctaccaactagcgttcccttaaattatttatcaagtctgtcttactttaatttccaaatattnnnnnnnnnnngttagaaatg |
300 |
Q |
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| T |
4348410 |
atgtaacttgcatatttctatcaactagtgttcccttaaa-tatttatcaaggctgtcttactttaatttccaaatattaaaaaaaaaaagttagaaatg |
4348508 |
T |
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| Q |
301 |
ggctgcaaatgcagtcatatgttggagataatgcaatttatggctgctttgcaatgcattattgcaaacaaaataatgcaatttgacatggtcatgcaag |
400 |
Q |
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| T |
4348509 |
ggctgcaaatgcagtcatatgttggagataatgcaatttatggctgctttgcaatgcattattgcaaacaaaataatgcaatttgacatggtcatgcaag |
4348608 |
T |
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| Q |
401 |
tcaaaggaattggaaaattgcaatacttagaaatcaatgcaaattaaaaggtgcttcaaagacacgctatct |
472 |
Q |
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| T |
4348609 |
tcaaaggaattggaaaattgcaatacttagaaatcaatgcaaattaaaaggtgcttcaaagacacgctatct |
4348680 |
T |
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