View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1632_low_10 (Length: 523)
Name: NF1632_low_10
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1632_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 196 - 513
Target Start/End: Original strand, 9485013 - 9485322
Alignment:
| Q |
196 |
aactttttaagactgcaattaaactatgcagtacatattccaaaacatgcatattttatcaccctttctgttacccaaatgggataccatagcatcagat |
295 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9485013 |
aactttttaagactgcaattaaaccatgcagtacttattccaaaacatgcatattttatcaccctttgtgttacccaaatgggataccatagcatcagat |
9485112 |
T |
|
| Q |
296 |
taatgcacaatgcaccgttaaaatgaatgacaaaactatagaatctttggttcaatctattaattattagtaatgtctaaacttcctaatgaaacaaagt |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||| |||| | | ||||||| ||||||||| |
|
|
| T |
9485113 |
taatgcacaatgcaccgttaaaatgaatgacaaaactacagaatatttggttcaa---------tattattaattgattattttcctaagaaaacaaagt |
9485203 |
T |
|
| Q |
396 |
taaaattgaatct-agatgaaaatgaaatgcttattgaatctgattccttttaacaattttctcttgccgtgtaa-taaaattccattttgttacaagtt |
493 |
Q |
| |
|
||||| ||||||| | |||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
9485204 |
taaaa-tgaatctcatatgaaaatgaaatgcttattgaatctgattcctttttaaaattttctcctgccgtgtaattaaaattccattttgttacaagtt |
9485302 |
T |
|
| Q |
494 |
gcactgcactattagttcat |
513 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
9485303 |
gtactgcactattagttcat |
9485322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 9481744 - 9481907
Alignment:
| Q |
20 |
agtgtgactcgtgtaactaatatgttgtctttaaataa-ttattgtctaatgaagtagttgttttcatctattataagtttgagagaaagatgtaacata |
118 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
9481744 |
agtgtgacttttgtaactaatatgttgtctttaaataaattattgtctaatgtagtagtt----tgatctattataagtttgagagaaagatgtaacata |
9481839 |
T |
|
| Q |
119 |
attaaaaacttattggtaacttagttaatacgtttggaaacctgaaatgggtttttataaaaagtgac |
186 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9481840 |
tttaaaaatttattggtaacttagttaatacatttggaaacctgaaatgggtttttataaaaagtgac |
9481907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University