View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1632_low_16 (Length: 479)
Name: NF1632_low_16
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1632_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 24 - 468
Target Start/End: Complemental strand, 42626302 - 42625857
Alignment:
| Q |
24 |
tgataaagaaacttcagctaagagaaaaacacatgtgccatctatgcttgnnnnnnnn-ttgtgtagatttttcaacgagtaaatgagcattttgattct |
122 |
Q |
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| T |
42626302 |
tgataaagaaacttcagctaagagaaaaacacatgtgccatctatgcttgaaaaaaaaattgtgtagacttttcaacgagtaaatgagcattttgattct |
42626203 |
T |
|
| Q |
123 |
taggttaaagaacgccaatatttgtcttgaaacagaaagaaactgttcaaaacaatacacatgtctatcttataaaatagattatattgatgaagggata |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42626202 |
taggttaaagaacgccaatatttgtcttgaaacagaaagaaactgttcaaaacaatacacatgtctatcttataaaatagattatattgatgaagggata |
42626103 |
T |
|
| Q |
223 |
atttcacgacgttttttaattgactaaatttccattttataaatatgattgaattacacaggaattataatttggaagaacaaaatggtgcttgactcaa |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42626102 |
atttcacgacgttttttaattgactaaatttccattttataaatatgattgaattacacaggaattataatttggaagaacaaaatggtgcttgactcaa |
42626003 |
T |
|
| Q |
323 |
ctagaatgctggcctacttatttgagcatttaactgagtctgtgatacaacacaaattatacaaccacgtcgtatgataatcttacacggtctcatatgg |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42626002 |
ctagaatgctggcctacttatttgagcatttaactgagtctgtgatacaacacaaattatacaaccacgtcgtatgataatcttacacggtctcgtatgg |
42625903 |
T |
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| Q |
423 |
cggagcatgtccaacatgtgtaataccaaaacgttatcgtgttctt |
468 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42625902 |
cggagcatgtccaacatgtgtaataccaaaacgttatcgtgttctt |
42625857 |
T |
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