View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1632_low_17 (Length: 473)
Name: NF1632_low_17
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1632_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 5398746 - 5399123
Alignment:
| Q |
1 |
tatataacaatgatcgtgtagtgacacttcttggaattgcatttacatggggacttatattgatttactctgttggtcacatttccggtcccaatttccc |
100 |
Q |
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| T |
5398746 |
tatataacaatgatcgtgtagtgacacttcttggaattgcatttacatggggacttatattgatttactctgttggtcacatttctggtcccaatttccc |
5398845 |
T |
|
| Q |
101 |
ccctactgctaaatacagcttcaaccatccaatctcattgtctgttaaagactcaaaggtgtttaaactgactgcttcaagccagctaaattaataaaaa |
200 |
Q |
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| T |
5398846 |
ccctactgctaaatacagcttcaaccatccaatctcattgtctgttaaagactcaaaggtgtttaaactgactgcttcaagccagctaaattaataaaaa |
5398945 |
T |
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| Q |
201 |
ccaatcaataagaagcaaaataggtttaaacagagaacagaatatgagaaaatcaaagaatgaattgcaatatc------catgtacacccacgtgagaa |
294 |
Q |
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| T |
5398946 |
ccaatcaataagaagcaaaataggtttaaacagagaacagaatatgagaaaatcaaagaatgaattgcaatatccatgtacatgtacacccacgtgagaa |
5399045 |
T |
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| Q |
295 |
aattatatagaataatcatcaagaaagtaccaaaaagaagaaagaagactatcatatatagctactattcaaaaccaa |
372 |
Q |
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| T |
5399046 |
aattatatagaataatcatcaagaaagtaccaaaaagaagaaagaagactgtcatatatagctactattcaaaaccaa |
5399123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 368 - 457
Target Start/End: Original strand, 5399168 - 5399257
Alignment:
| Q |
368 |
accaatgacactccataactttaacatgatgtatggagggctaagattcattattgaccaacataatttcaggaaaagagacaaatgttt |
457 |
Q |
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| T |
5399168 |
accaatgacactccataactttaacatgatgtatggagggctaagattcattattgaccaacataatttcaagaaaagagacaaatgttt |
5399257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 5415173 - 5415221
Alignment:
| Q |
5 |
taacaatgatcgtgtagtgacacttcttggaattgcatttacatgggga |
53 |
Q |
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||||||||||| |||||| ||||||| ||||||||||||| | |||||| |
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| T |
5415173 |
taacaatgatcatgtagtaacacttcctggaattgcatttgcttgggga |
5415221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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