View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1632_low_2 (Length: 742)
Name: NF1632_low_2
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1632_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 341 - 726
Target Start/End: Complemental strand, 41082412 - 41082028
Alignment:
| Q |
341 |
aacttatcttgcaaagtttaatctagagtaccacccccacgaaatctcnnnnnnnagttacatagttccttttcccttttcaatctttgtttatgaaatg |
440 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
41082412 |
aacttaccttgcaaagtttaatctagagtaccacccccacgaattttttttttttagttacatagttccttttcccttttcgatctttgtttatgaaatg |
41082313 |
T |
|
| Q |
441 |
gatatatcagtttgagcttattttcaagtgagcaagagaatagatttatcaattaaatgagttgataccacaatatagctattggagtgaggatgaatta |
540 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
41082312 |
gatatatcagtttgagcttattttcaagtgagcaagtgaatagatttatcaattaa-tgagttgatagcacaatatagctattggagtgaggatgaatta |
41082214 |
T |
|
| Q |
541 |
atatgttctcttatttgctcgctaccatatattacatgttaatcaaccataaggaaattccaacatacagaatagaaccatgtgtagtcatcttctggat |
640 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41082213 |
atatgttctcttatttgctcgctaccttatattacatgttaatcaaccataaggaaattccaacatacagaatagaaccatgtgtagtcatcttctggat |
41082114 |
T |
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| Q |
641 |
ctactattgaagagttgtgttatttgaaagtgtaattgatctggatttagttgttatgcaaaatggaatctatgattagacatata |
726 |
Q |
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| T |
41082113 |
ctactattgaagagttgtgttatttgaaagtgcaattgatctggatttagttgttatgcaaaatggaatctatgattagacatata |
41082028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 41 - 384
Target Start/End: Complemental strand, 41105505 - 41105173
Alignment:
| Q |
41 |
attggttttgtttcttcaatttatggcctttctctttatacatgttttggtcttaatgcgagtaatttttacaggtcgtgactagtttagctgatccttc |
140 |
Q |
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| T |
41105505 |
attggctttgtatctgcattttctggcctttctctttatt-atgtcaagttctcaatgcgtgtaatttttacaggttgtgactagtttggctgatccttc |
41105407 |
T |
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| Q |
141 |
tgccaatattatatttgctgatttggagctgttgctgatgatcgttacaccgtggagattattgttgactatcatcgctgctggtttttcgcagtccttt |
240 |
Q |
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| T |
41105406 |
tgccaatattatatttg--------gagctgttgttgatgatcgttacaccggggagattcacgt-gactatcattgccactggcttttcgcagtctttt |
41105316 |
T |
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| Q |
241 |
cagaagaagctgctaacagatccaagggctgcaaagctttatgacaaagtggccactggaaaagaaagcaggacactgcctcctccccctcaagtcctca |
340 |
Q |
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| T |
41105315 |
cagaagaagctgctaacagatccaagggcagcaaagcttcttgacaaagtggccgagggaaaagaaagcaagacagtgcccgct-cccctcaagtcctca |
41105217 |
T |
|
| Q |
341 |
aacttatcttgcaaagtttaatctagagtaccacccccacgaaa |
384 |
Q |
| |
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|||||||| | ||||||| ||||||||| ||| ||||||||||| |
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| T |
41105216 |
aacttatcctccaaagttgaatctagagcaccgcccccacgaaa |
41105173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 449 - 699
Target Start/End: Complemental strand, 41104991 - 41104745
Alignment:
| Q |
449 |
agtttgagcttattttcaagtgagcaagagaatagatttatcaattaaatgagttgataccacaatatagctattggagtgaggatgaa---ttaatatg |
545 |
Q |
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|||||||||||||||| ||||||||||| ||||| ||||||| | | ||| || ||||||||||| | |||||||||||||||||| | || ||| |
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| T |
41104991 |
agtttgagcttatttttaagtgagcaagtgaatatatttatcgagt---tgatatggtaccacaatattgatattggagtgaggatgaacaatgaacatg |
41104895 |
T |
|
| Q |
546 |
ttctcttatttgctcgctaccatatattacatgttaatcaaccataaggaaattccaacatacagaatagaaccatgtgtagtcatcttctggatctact |
645 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| | | |||||||||||||| ||||||||||||||||||| |||| |||||||||||| |
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| T |
41104894 |
ttctcttatttgctcgctaccttatattacatgttaatcaaccttgatgaaattccaacatatagaatagaaccatgtgtag-catcatctggatctact |
41104796 |
T |
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| Q |
646 |
attgaagagttgtgttatttgaaagtgtaattgatctggatttagttgttatgc |
699 |
Q |
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||| |||||||||| |||||||||| ||||||||||||||||||||| |||| |
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| T |
41104795 |
attaaagagttgtg---tttgaaagtgcaattgatctggatttagttgtaatgc |
41104745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 466 - 572
Target Start/End: Complemental strand, 39739082 - 39738981
Alignment:
| Q |
466 |
aagtgagcaagagaatagatttatcaattaaatgagttgataccacaatatagctattggagtgaggatgaattaatatgttctcttatttgctcgctac |
565 |
Q |
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||||||| ||| ||||| |||||||| |||| ||||||||||| |||| ||||||||||||||||||||| | | |||||||||||||||| ||||| |
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| T |
39739082 |
aagtgagtaagtgaatatatttatcatttaa-tgagttgatacaacaaaatagctattggagtgaggatg----actgtgttctcttatttgcttgctac |
39738988 |
T |
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| Q |
566 |
catatat |
572 |
Q |
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| T |
39738987 |
cttatat |
39738981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 279
Target Start/End: Complemental strand, 21865315 - 21865268
Alignment:
| Q |
232 |
cagtcctttcagaagaagctgctaacagatccaagggctgcaaagctt |
279 |
Q |
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|||||||| || |||| ||| ||||||||||||||||||||||||||| |
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| T |
21865315 |
cagtccttccaaaagatgctactaacagatccaagggctgcaaagctt |
21865268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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