View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1632_low_22 (Length: 434)

Name: NF1632_low_22
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1632_low_22
NF1632_low_22
[»] chr8 (3 HSPs)
chr8 (20-418)||(36946883-36947281)
chr8 (366-407)||(5718451-5718492)
chr8 (371-415)||(5686299-5686343)
[»] chr4 (5 HSPs)
chr4 (363-415)||(24060631-24060683)
chr4 (372-415)||(5288577-5288620)
chr4 (366-415)||(42504198-42504247)
chr4 (368-407)||(16528629-16528668)
chr4 (333-413)||(2765331-2765419)
[»] scaffold0122 (1 HSPs)
scaffold0122 (363-415)||(18689-18741)
[»] chr7 (6 HSPs)
chr7 (366-414)||(44601056-44601104)
chr7 (366-415)||(21882773-21882822)
chr7 (366-415)||(46413747-46413796)
chr7 (366-410)||(20125650-20125694)
chr7 (372-415)||(46297668-46297711)
chr7 (372-412)||(8123749-8123789)
[»] chr1 (9 HSPs)
chr1 (366-415)||(10061647-10061696)
chr1 (366-415)||(21540129-21540178)
chr1 (366-415)||(43537149-43537198)
chr1 (363-410)||(26470004-26470051)
chr1 (346-407)||(23906591-23906651)
chr1 (370-415)||(35149672-35149717)
chr1 (366-412)||(29657422-29657468)
chr1 (373-407)||(33077750-33077784)
chr1 (372-412)||(4684526-4684566)
[»] chr5 (5 HSPs)
chr5 (369-412)||(7547323-7547366)
chr5 (366-415)||(3040264-3040313)
chr5 (372-412)||(20359971-20360011)
chr5 (366-415)||(30700874-30700923)
chr5 (363-415)||(30735322-30735374)
[»] chr2 (6 HSPs)
chr2 (368-411)||(14131215-14131258)
chr2 (367-412)||(37714481-37714526)
chr2 (372-407)||(3167959-3167994)
chr2 (366-412)||(38320204-38320250)
chr2 (370-415)||(27407477-27407522)
chr2 (343-407)||(5881413-5881476)
[»] chr6 (1 HSPs)
chr6 (368-415)||(6784708-6784755)
[»] chr3 (5 HSPs)
chr3 (366-412)||(1632866-1632912)
chr3 (366-412)||(2671961-2672007)
chr3 (366-412)||(34905904-34905950)
chr3 (369-415)||(45852941-45852987)
chr3 (371-412)||(18271972-18272013)


Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 20 - 418
Target Start/End: Original strand, 36946883 - 36947281
Alignment:
Q  20 ggagtggggctttaacatcggcctttatcactttcgtatcggatactgttggcactttggcatcagctaccaccattgtcgtggtgctggattatgatgg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36946883 ggagtggggctttaacatcggcctttatcactttcgtatcggatactgttggcactttggcatcagctaccaccattgtcgtggtgctggattatgatgg 36946982  T
Q  120 ttatactaggtcgatatcgacatctaggatcaacatgtggctcaaatgaccctcttcatgacactcttgataagttgaagtttacgttactactagtgtc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  36946983 ttatactaggtcgatatcgacatctaggatcaacatgtggctcaaatgaccctcttgatgacactcttgataagttgaagtttacgttactactggtgtc 36947082  T
Q  220 aatttattttctattgttttttatcaaatcaatctcaagctgtcggaggatttacaggttcggttagaattacattggccaaatctgttatctcacttaa 319  Q
    |||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  36947083 aatttattttcttttgttttttatcaaatcaatctcaagttgtctgaggatttacaggttcggttagaattactttggccaaatctgttatctcacttaa 36947182  T
Q  320 ttaaatcttaggaaaatgcttgatacagtgacaaaatgtatcaaaaacagtgtatttgctaacacatttctttaattacacatcattatctcccttcat 418  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||| ||||||||||    
T  36947183 ttaaatcttagggaaatgcttgatacagtgacaaaatgtatcaaaaacagtgtatttattaacacatttctttaattatacatcattacctcccttcat 36947281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 366 - 407
Target Start/End: Original strand, 5718451 - 5718492
Alignment:
Q  366 acagtgtatttgctaacacatttctttaattacacatcatta 407  Q
    |||||||||||||||||||||||| ||||||||||| |||||    
T  5718451 acagtgtatttgctaacacatttccttaattacacaccatta 5718492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 415
Target Start/End: Original strand, 5686299 - 5686343
Alignment:
Q  371 gtatttgctaacacatttctttaattacacatcattatctccctt 415  Q
    ||||||||||||||||||| ||||||||| || |||| |||||||    
T  5686299 gtatttgctaacacatttcattaattacatattattacctccctt 5686343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 363 - 415
Target Start/End: Complemental strand, 24060683 - 24060631
Alignment:
Q  363 aaaacagtgtatttgctaacacatttctttaattacacatcattatctccctt 415  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  24060683 aaaacagtgtatttgctaacacatttccttaattacacaccattatctccctt 24060631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 415
Target Start/End: Complemental strand, 5288620 - 5288577
Alignment:
Q  372 tatttgctaacacatttctttaattacacatcattatctccctt 415  Q
    ||||||||||||||||| |||||||||||| |||||||||||||    
T  5288620 tatttgctaacacatttttttaattacacaccattatctccctt 5288577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 366 - 415
Target Start/End: Original strand, 42504198 - 42504247
Alignment:
Q  366 acagtgtatttgctaacacatttctttaattacacatcattatctccctt 415  Q
    |||||||||||| |||||| |||| ||||||||||||||||| |||||||    
T  42504198 acagtgtatttgttaacacctttccttaattacacatcattacctccctt 42504247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 407
Target Start/End: Complemental strand, 16528668 - 16528629
Alignment:
Q  368 agtgtatttgctaacacatttctttaattacacatcatta 407  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  16528668 agtgtatttgttaacacatttctttaattacacaccatta 16528629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 413
Target Start/End: Original strand, 2765331 - 2765419
Alignment:
Q  333 aaatgcttgatacagtgacaaaatgtatcaaaa-------acagtgta-tttgctaacacatttctttaattacacatcattatctccc 413  Q
    |||||||||||| ||||||||||||||||||||       ||| |||| |||  |||||| |||| |||||||||||||||||||||||    
T  2765331 aaatgcttgatatagtgacaaaatgtatcaaaaattcaagacactgtatttttttaacacctttcattaattacacatcattatctccc 2765419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 363 - 415
Target Start/End: Complemental strand, 18741 - 18689
Alignment:
Q  363 aaaacagtgtatttgctaacacatttctttaattacacatcattatctccctt 415  Q
    ||||||||||||||||||||||||||| |||||||| || |||||||||||||    
T  18741 aaaacagtgtatttgctaacacatttccttaattactcaccattatctccctt 18689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 366 - 414
Target Start/End: Complemental strand, 44601104 - 44601056
Alignment:
Q  366 acagtgtatttgctaacacatttctttaattacacatcattatctccct 414  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||    
T  44601104 acagtgtatttgctaacacattttcttaattacacatcattatctccct 44601056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 366 - 415
Target Start/End: Original strand, 21882773 - 21882822
Alignment:
Q  366 acagtgtatttgctaacacatttctttaattacacatcattatctccctt 415  Q
    ||||||||||||||||||| |||| ||||||||||| ||||| |||||||    
T  21882773 acagtgtatttgctaacacttttccttaattacacaccattacctccctt 21882822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 366 - 415
Target Start/End: Original strand, 46413747 - 46413796
Alignment:
Q  366 acagtgtatttgctaacacatttctttaattacacatcattatctccctt 415  Q
    |||||||||||| |||||| |||| ||||||||||||||||| |||||||    
T  46413747 acagtgtatttgttaacacctttccttaattacacatcattacctccctt 46413796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 366 - 410
Target Start/End: Complemental strand, 20125694 - 20125650
Alignment:
Q  366 acagtgtatttgctaacacatttctttaattacacatcattatct 410  Q
    |||||||||||||||| || |||||||||||||||| ||||||||    
T  20125694 acagtgtatttgctaatacctttctttaattacacaccattatct 20125650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 415
Target Start/End: Complemental strand, 46297711 - 46297668
Alignment:
Q  372 tatttgctaacacatttctttaattacacatcattatctccctt 415  Q
    |||||||||||||||||| ||||||||||| ||||| |||||||    
T  46297711 tatttgctaacacatttccttaattacacaccattaactccctt 46297668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 412
Target Start/End: Complemental strand, 8123789 - 8123749
Alignment:
Q  372 tatttgctaacacatttctttaattacacatcattatctcc 412  Q
    ||||||||||||| |||||||||||| |||| |||||||||    
T  8123789 tatttgctaacacctttctttaattatacattattatctcc 8123749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 415
Target Start/End: Complemental strand, 10061696 - 10061647
Alignment:
Q  366 acagtgtatttgctaacacatttctttaattacacatcattatctccctt 415  Q
    ||||| |||||||||||||||||| ||||||||||||||||| |||||||    
T  10061696 acagtttatttgctaacacatttccttaattacacatcattacctccctt 10061647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 415
Target Start/End: Complemental strand, 21540178 - 21540129
Alignment:
Q  366 acagtgtatttgctaacacatttctttaattacacatcattatctccctt 415  Q
    |||||||||||| |||||| ||||||||||||||| ||||||||||||||    
T  21540178 acagtgtatttgttaacacctttctttaattacacttcattatctccctt 21540129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 415
Target Start/End: Original strand, 43537149 - 43537198
Alignment:
Q  366 acagtgtatttgctaacacatttctttaattacacatcattatctccctt 415  Q
    |||||||||||| ||||||||||||||||||||||| ||||| |||||||    
T  43537149 acagtgtatttgttaacacatttctttaattacacaccattacctccctt 43537198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 363 - 410
Target Start/End: Complemental strand, 26470051 - 26470004
Alignment:
Q  363 aaaacagtgtatttgctaacacatttctttaattacacatcattatct 410  Q
    |||||||||||||||||||||| |||| ||||||||||| ||||||||    
T  26470051 aaaacagtgtatttgctaacacctttccttaattacacaccattatct 26470004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 346 - 407
Target Start/End: Original strand, 23906591 - 23906651
Alignment:
Q  346 agtgacaaaatgtatcaaaaacagtgtatttgctaacacatttctttaattacacatcatta 407  Q
    ||||||||| |||||||| | || ||||||||||||||| |||||||||||||||| |||||    
T  23906591 agtgacaaactgtatcaaga-caatgtatttgctaacacctttctttaattacacaccatta 23906651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 370 - 415
Target Start/End: Original strand, 35149672 - 35149717
Alignment:
Q  370 tgtatttgctaacacatttctttaattacacatcattatctccctt 415  Q
    ||||||||||||||| |||| ||||||| |||||||||||||||||    
T  35149672 tgtatttgctaacacctttccttaattatacatcattatctccctt 35149717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 412
Target Start/End: Complemental strand, 29657468 - 29657422
Alignment:
Q  366 acagtgtatttgctaacacatttctttaattacacatcattatctcc 412  Q
    ||||||||||||||||||| |||| ||||||||| ||||||| ||||    
T  29657468 acagtgtatttgctaacacctttccttaattacatatcattacctcc 29657422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 407
Target Start/End: Complemental strand, 33077784 - 33077750
Alignment:
Q  373 atttgctaacacatttctttaattacacatcatta 407  Q
    |||||||||||||||| ||||||||||||||||||    
T  33077784 atttgctaacacatttatttaattacacatcatta 33077750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 412
Target Start/End: Complemental strand, 4684566 - 4684526
Alignment:
Q  372 tatttgctaacacatttctttaattacacatcattatctcc 412  Q
    ||||||||||||| |||| ||||||||||| ||||||||||    
T  4684566 tatttgctaacacctttccttaattacacaccattatctcc 4684526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 412
Target Start/End: Complemental strand, 7547366 - 7547323
Alignment:
Q  369 gtgtatttgctaacacatttctttaattacacatcattatctcc 412  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||    
T  7547366 gtgtatttgctaacacatttccttaattacaaatcattatctcc 7547323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 366 - 415
Target Start/End: Original strand, 3040264 - 3040313
Alignment:
Q  366 acagtgtatttgctaacacatttctttaattacacatcattatctccctt 415  Q
    ||||||||||||||||||| |||| ||||||||||| ||||| |||||||    
T  3040264 acagtgtatttgctaacacctttccttaattacacaccattacctccctt 3040313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 372 - 412
Target Start/End: Complemental strand, 20360011 - 20359971
Alignment:
Q  372 tatttgctaacacatttctttaattacacatcattatctcc 412  Q
    ||||||||||||| |||||||||||||||| ||||||||||    
T  20360011 tatttgctaacacctttctttaattacacaccattatctcc 20359971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 415
Target Start/End: Original strand, 30700874 - 30700923
Alignment:
Q  366 acagtgtatttgctaacacatttctttaattacacatcattatctccctt 415  Q
    ||||||||||||||||||| |||  ||||||||||| ||||| |||||||    
T  30700874 acagtgtatttgctaacaccttttcttaattacacaacattacctccctt 30700923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 415
Target Start/End: Original strand, 30735322 - 30735374
Alignment:
Q  363 aaaacagtgtatttgctaacacatttctttaattacacatcattatctccctt 415  Q
    |||||||||||||||||||||| |||  |||||||| || ||||| |||||||    
T  30735322 aaaacagtgtatttgctaacactttttcttaattacccagcattacctccctt 30735374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 368 - 411
Target Start/End: Complemental strand, 14131258 - 14131215
Alignment:
Q  368 agtgtatttgctaacacatttctttaattacacatcattatctc 411  Q
    |||||||||||||||||||||| ||||||||||| |||||||||    
T  14131258 agtgtatttgctaacacatttccttaattacacaccattatctc 14131215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 367 - 412
Target Start/End: Complemental strand, 37714526 - 37714481
Alignment:
Q  367 cagtgtatttgctaacacatttctttaattacacatcattatctcc 412  Q
    |||||||||||||||||| |||| ||||||||||| ||||||||||    
T  37714526 cagtgtatttgctaacacctttccttaattacacaccattatctcc 37714481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 407
Target Start/End: Complemental strand, 3167994 - 3167959
Alignment:
Q  372 tatttgctaacacatttctttaattacacatcatta 407  Q
    ||||||||||||| ||||||||||||||||||||||    
T  3167994 tatttgctaacacctttctttaattacacatcatta 3167959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 412
Target Start/End: Original strand, 38320204 - 38320250
Alignment:
Q  366 acagtgtatttgctaacacatttctttaattacacatcattatctcc 412  Q
    |||||||||||| ||||||||||| ||| ||||||||||||| ||||    
T  38320204 acagtgtatttgataacacatttccttatttacacatcattacctcc 38320250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 415
Target Start/End: Complemental strand, 27407522 - 27407477
Alignment:
Q  370 tgtatttgctaacacatttctttaattacacatcattatctccctt 415  Q
    |||||||||||| ||||||| ||||||||||| |||||||| ||||    
T  27407522 tgtatttgctaatacatttccttaattacacagcattatcttcctt 27407477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 407
Target Start/End: Original strand, 5881413 - 5881476
Alignment:
Q  343 tacagtgacaaaatgtatcaaaaacagtgtatttgctaacacatttctttaattacacatcatta 407  Q
    |||| ||||||||||||| || | |||| |||||||||| || |||| |||||||||||||||||    
T  5881413 tacactgacaaaatgtattaata-cagtatatttgctaatacctttccttaattacacatcatta 5881476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 415
Target Start/End: Original strand, 6784708 - 6784755
Alignment:
Q  368 agtgtatttgctaacacatttctttaattacacatcattatctccctt 415  Q
    ||||||||||||||||| |||  ||||||||||| |||||||||||||    
T  6784708 agtgtatttgctaacaccttttcttaattacacaccattatctccctt 6784755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 412
Target Start/End: Complemental strand, 1632912 - 1632866
Alignment:
Q  366 acagtgtatttgctaacacatttctttaattacacatcattatctcc 412  Q
    |||||||||||| |||||| |||||||||||||||| ||||| ||||    
T  1632912 acagtgtatttgttaacacgtttctttaattacacaccattacctcc 1632866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 412
Target Start/End: Complemental strand, 2672007 - 2671961
Alignment:
Q  366 acagtgtatttgctaacacatttctttaattacacatcattatctcc 412  Q
    |||||||||||| |||||  |||| ||||||||||||||||||||||    
T  2672007 acagtgtatttgttaacatctttccttaattacacatcattatctcc 2671961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 412
Target Start/End: Complemental strand, 34905950 - 34905904
Alignment:
Q  366 acagtgtatttgctaacacatttctttaattacacatcattatctcc 412  Q
    ||||||||||||||||||| |||| ||||||| ||||||||| ||||    
T  34905950 acagtgtatttgctaacacctttccttaattatacatcattacctcc 34905904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 415
Target Start/End: Original strand, 45852941 - 45852987
Alignment:
Q  369 gtgtatttgctaacacatttctttaattacacatcattatctccctt 415  Q
    |||||||||||||||| |||  ||||||||| |||||||||||||||    
T  45852941 gtgtatttgctaacaccttttcttaattacatatcattatctccctt 45852987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Original strand, 18271972 - 18272013
Alignment:
Q  371 gtatttgctaacacatttctttaattacacatcattatctcc 412  Q
    |||||||||||||| |||||||||||||||| ||||| ||||    
T  18271972 gtatttgctaacacctttctttaattacacaccattacctcc 18272013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University