View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1632_low_23 (Length: 429)
Name: NF1632_low_23
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1632_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 11 - 412
Target Start/End: Complemental strand, 10012920 - 10012519
Alignment:
| Q |
11 |
cacagacgtagctatcacttcaagatgtcttactctactcgtccactgcttcgtatcatggacacaccaccgcgccaacaccctctccttaatttgaacg |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
10012920 |
cacagacgtagctatcacttcaagatgtcttactctactcgtccactgcttcgtaccatggccacaccaccgcgccaacaccctctccttaatttgaact |
10012821 |
T |
|
| Q |
111 |
gacggtgagtttaacaaaatcacgatgtgccaccgtgattttgtcaaaagctacactttagacttcaacaaaataacgctgccaccatgattttgacaaa |
210 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
10012820 |
gacagtgagtttaacaaaatcacgatgtgccaccgtgattttgtcaaaagctacactttggacttcaacaaaataacgctgccaccatgattttgacaaa |
10012721 |
T |
|
| Q |
211 |
tctaccgcgatagaaaatatgctcaaagttggattgcgtaaaagccacccgtcctaatttgattctttgatggtattcatgaaggcatttagccaattat |
310 |
Q |
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|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10012720 |
tctaccgcgatagaaaatatgctccaagttggattgcataaaagccacccgtcctaatttgattctttgatggtattcatgaaggcatttagccaattat |
10012621 |
T |
|
| Q |
311 |
gtgactcttcccttctccaatgaataaagttctctaccacatattacactcttctttccctccacaagaaagttatatcattactttatgtcctcttcct |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10012620 |
gtgactcttcccttctccaatgaataaagttctctaccacatattacactcttctttccctccacaagaaagttatatcattactttatgtcctcttcct |
10012521 |
T |
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| Q |
411 |
at |
412 |
Q |
| |
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|| |
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| T |
10012520 |
at |
10012519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 126 - 169
Target Start/End: Original strand, 10341268 - 10341311
Alignment:
| Q |
126 |
aaaatcacgatgtgccaccgtgattttgtcaaaagctacacttt |
169 |
Q |
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| T |
10341268 |
aaaatcacgatgtgccaccgtgattttgacaaaagctacacttt |
10341311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 184
Target Start/End: Complemental strand, 6011275 - 6011216
Alignment:
| Q |
125 |
caaaatcacgatgtgccaccgtgattttgtcaaaagctacactttagacttcaacaaaat |
184 |
Q |
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|||||||| | ||| ||||| |||||||||||||||||||| |||| |||||||||||| |
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| T |
6011275 |
caaaatcatggtgtcccaccctgattttgtcaaaagctacagtttaagcttcaacaaaat |
6011216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 128 - 211
Target Start/End: Original strand, 25719720 - 25719802
Alignment:
| Q |
128 |
aatcacgatgtgccaccgtgattttgtcaaaagctacactttaga-cttcaacaaaataacgctgccaccatgattttgacaaat |
211 |
Q |
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|||||| ||| || |||||||||||| ||||||||||||||||| |||||||||||| ||| | ||| |||||||||| ||||| |
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| T |
25719720 |
aatcacaatgagctaccgtgattttg--aaaagctacactttagagcttcaacaaaatcacggtaccatcatgattttggcaaat |
25719802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 44279118 - 44279082
Alignment:
| Q |
128 |
aatcacgatgtgccaccgtgattttgtcaaaagctac |
164 |
Q |
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| T |
44279118 |
aatcacggtgtgccaccgtgattttgacaaaagctac |
44279082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 35027568 - 35027503
Alignment:
| Q |
146 |
tgattttgtcaaaagctacactttaga-cttcaacaaaataacgctgccaccatgattttgacaaa |
210 |
Q |
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|||||||| ||||||||||||| ||| |||||||||||| ||| | ||||| ||||||||||||| |
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| T |
35027568 |
tgattttgataaaagctacacttcagagcttcaacaaaattacggtaccaccttgattttgacaaa |
35027503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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