View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1632_low_25 (Length: 417)
Name: NF1632_low_25
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1632_low_25 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 5 - 417
Target Start/End: Complemental strand, 7655694 - 7655284
Alignment:
| Q |
5 |
ataaaatacttctcaaaagtgtaatgtttcctccaatgaaggcaccaaatgtgactgcagggttcacatgtccaccagagatgtttgctccaacagaaac |
104 |
Q |
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| T |
7655694 |
ataaaatacttctcaaaagtgtaatgtttcctccaatgaaggcaccaaatgtgactgcagggttcacatgtccaccagatatgtttgctccaacagaaac |
7655595 |
T |
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| Q |
105 |
agcaacaaatagtccaaatgcatgagatagtgatgcagctatgaggccagctggtgttgcagggccattattggtaagtttacctgccaaaataaccaac |
204 |
Q |
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| T |
7655594 |
ggcaacaaatagtccaaatgcatgagatagtgatgcagctatgaggccagcaggtgttgcagggccattattggtaagtttgcctgccaaaataaccaac |
7655495 |
T |
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| Q |
205 |
aatcattcattttactagcatcataataatgcatcaaaatggatg-nnnnnnnnnnctcttgaaccatatagttttcaaaactttagcataaaagttacg |
303 |
Q |
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| T |
7655494 |
aatcattcattttactagcatca---taatgcatcaaaatggatgaaaaaaaaaaactcttgaaccatatagttttcaaaactttagcataaaagttacg |
7655398 |
T |
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| Q |
304 |
gagtacgttaggcgcgaactcaatggtaaaattttgaccttgtaaccttaaggaaaggagttcaaatatccttaaaggtgtttatataataatcatttag |
403 |
Q |
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| T |
7655397 |
gagtacgttaggcgcgaactcaatggtaaaattttgaccttgtaaccttaaggaaaggagttcaaatatccttaaaggtgtttttataataatcatttag |
7655298 |
T |
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| Q |
404 |
tgtcattataatta |
417 |
Q |
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| T |
7655297 |
tgtcattataatta |
7655284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 113
Target Start/End: Original strand, 41418436 - 41418521
Alignment:
| Q |
28 |
atgtttcctccaatgaaggcaccaaatgtgactgcagggttcacatgtccaccagagatgtttgctccaacagaaacagcaacaaa |
113 |
Q |
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| T |
41418436 |
atgttaccaccaacgaaggcaccgaaggtgacagcggggttgacatgtccaccggagatgttagcaccaacggagacagcaacaaa |
41418521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 7 - 206
Target Start/End: Original strand, 52103024 - 52103223
Alignment:
| Q |
7 |
aaaatacttctcaaaagtgtaatgtttcctccaatgaaggcaccaaatgtgactgcagggttcacatgtccaccagagatgtttgctccaacagaaacag |
106 |
Q |
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| T |
52103024 |
aaaatacttctcaagaaggtaatgtttcctccaatgaaagcaccaaatgtgactgcagggttcacatgtccaccagaaatgtttgcaccaacagaaacag |
52103123 |
T |
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| Q |
107 |
caacaaatagtccaaatgcatgagatagtgatgcagctatgaggccagctggtgttgcagggccattattggtaagtttacctgccaaaataaccaacaa |
206 |
Q |
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| T |
52103124 |
ccacaaataacccaaatgcatgagataatgatgcaactatgagaccttcaggagtggcagctccattgtttgtaagtttatctgccacaatagccaacaa |
52103223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 22 - 145
Target Start/End: Complemental strand, 23339561 - 23339438
Alignment:
| Q |
22 |
agtgtaatgtttcctccaatgaaggcaccaaatgtgactgcagggttcacatgtccaccagagatgtttgctccaacagaaacagcaacaaatagtccaa |
121 |
Q |
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| T |
23339561 |
agtgtaatgtgtccaccaatgaatgcaccaaaagtgacagcagggttgacatgtccaccagaaatgttagcaccaacagagacagcaacaaaaagtgcaa |
23339462 |
T |
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| Q |
122 |
atgcatgagatagtgatgcagcta |
145 |
Q |
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| T |
23339461 |
atgcatgtgatagtgatgcagcta |
23339438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 113
Target Start/End: Complemental strand, 43585250 - 43585201
Alignment:
| Q |
64 |
gggttcacatgtccaccagagatgtttgctccaacagaaacagcaacaaa |
113 |
Q |
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| T |
43585250 |
gggttgacatgtccaccagatatgttggctccaacagaaacagcaacaaa |
43585201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 122
Target Start/End: Original strand, 4190170 - 4190243
Alignment:
| Q |
49 |
ccaaatgtgactgcagggttcacatgtccaccagagatgtttgctccaacagaaacagcaacaaatagtccaaa |
122 |
Q |
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| T |
4190170 |
ccaaaggtgacagcagggttgacatgaccaccagaaatgttggcaccaactgcaacagcaacaaaaagtgcaaa |
4190243 |
T |
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