View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1632_low_27 (Length: 402)
Name: NF1632_low_27
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1632_low_27 |
 | |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 13 - 377
Target Start/End: Original strand, 2592593 - 2592958
Alignment:
| Q |
13 |
tgagaaaggaacacattcatctttgttgtctaaagggccaagtggaacatattactctttgataagtctacaaagaagaccaacgaacataattgttgat |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||| ||||||||| ||||| |
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|
| T |
2592593 |
tgagaaaggaacacattcatctttgttgtctaaagggccaagtggagcatattactctttgataagtctaaaaataagaccaaccaacataattattgat |
2592692 |
T |
|
| Q |
113 |
tcttcacatgaaatcaactaaataaacaatatcaagtttttcatgtttgaaggggagaagcaacaaagaggagttgatgatgtagttgttgtgg----ta |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||| | |||||||||||||||||||| | || |
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| T |
2592693 |
tcttcacatgaaatcaactaaataaacaatatcaagtttttaatgttttaagg---gaagcaacaaagatgggttgatgatgtagttgttgtagtaatta |
2592789 |
T |
|
| Q |
209 |
ataggtgaaattgaaaagaaaattgagaagaggttcagggaaattggtttcaccttagcttcttaaaaatttcatttctacaatcatcaaaattgtaggc |
308 |
Q |
| |
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||||| |||||||||||||||| |||||||||||||| |||||||||||||| ||||||||| ||||| ||||||||||| |||||||||||||||||| |
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| T |
2592790 |
ataggcgaaattgaaaagaaaactgagaagaggttcaaggaaattggtttcaacttagcttcctaaaattttcatttctataatcatcaaaattgtaggt |
2592889 |
T |
|
| Q |
309 |
ttttctaacataagacaattcctatgctaattactatatcgttatattgtaatatagttaaatcctttt |
377 |
Q |
| |
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|| |||||||||| |||||||||||| |||| ||||||| ||||||||||||| ||||||||||||||| |
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|
| T |
2592890 |
ttgtctaacataacacaattcctatgataataactatatggttatattgtaatttagttaaatcctttt |
2592958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 13 - 359
Target Start/End: Complemental strand, 2568677 - 2568334
Alignment:
| Q |
13 |
tgagaaaggaacacattcatctttgttgtctaaagggccaagtggaacatattactctttgataagtctacaaagaagaccaacgaacataattgttgat |
112 |
Q |
| |
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||||||||||||||||||| ||| ||||| |||||||||||||| | |||||||||||| ||||||| ||||||||||||| || ||||| || |
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| T |
2568677 |
tgagaaaggaacacattcaaatttattgtcaaaagggccaagtggtgcttattactctttggtaagtctgcaaagaagaccaaacaatttaatttcgtat |
2568578 |
T |
|
| Q |
113 |
tcttcacatgaaatcaactaaataaacaatatcaagtttttcatgtttgaaggggagaagcaacaaagaggagttgatgatgtagttgttgtggtaatag |
212 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||| || | ||||||||| |||||||| ||| || |
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| T |
2568577 |
tcttcacatgaaatcaactaaataaacaatactaagtttttcatgtttgaaggg-agaagcaagaaagaagaatcgatgatgtacttgttgtgataacag |
2568479 |
T |
|
| Q |
213 |
gtgaaattgaaaagaaaattgagaagaggttcagggaaattggtttcaccttagcttcttaaaaatttcatttctacaatcatcaaaattgtaggctttt |
312 |
Q |
| |
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||||||||||||| ||||||||| |||||| | ||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||| || |||| |
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| T |
2568478 |
gtgaaattgaaaataaaattgag--gaggtttacggaaattggttgtcccttagcttctaaaaaatttcatttgtacaatcatcaaaattgttggttttt |
2568381 |
T |
|
| Q |
313 |
ctaacataagacaattcctatgctaattactatatcgttatattgta |
359 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||| ||||| ||||| |
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|
| T |
2568380 |
caaacataagacaattcctatgttaattactatatagttattttgta |
2568334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 13 - 379
Target Start/End: Complemental strand, 2672052 - 2671688
Alignment:
| Q |
13 |
tgagaaaggaacacattcatctttgttgtctaaagggccaagtggaacatattactctttgataagtctacaaagaagaccaacgaacataattgttgat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||| ||||| | | ||||| |
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| T |
2672052 |
tgagaaaggaacacattcatctttgttgtctaaagggccaagtggagcttattactctttggtaagtctacaaagaagaccaaccaacattactattgat |
2671953 |
T |
|
| Q |
113 |
tcttcacatgaaatcaactaaataaacaatatcaagtttttcatgtttgaaggggagaagcaacaaagaggagttgatgatgtagttgttgtggtaatag |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| | | ||| ||| |||||||||||||| | |
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| T |
2671952 |
tcttcacatgaaatcaactaaataaacaatatcaagtttttcatggttgaa-gggagaagcaacaaagaattgattatg-tgttgttgttgtggtaattg |
2671855 |
T |
|
| Q |
213 |
gtga----aattgaaaagaaaattgagaagaggttcagggaaattggtttcacc-ttagcttcttaaaaatttcatttctacaatcatcaaaattgtagg |
307 |
Q |
| |
|
| || ||||||||||||||||||||||||||| | ||| |||| || | || |||||||| ||| |||||| | |||||||||||||||||| || |
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|
| T |
2671854 |
gcgaaattaattgaaaagaaaattgagaagaggtttaaggagattgtttgctcctttagcttccaaaagttttcatctgtacaatcatcaaaattgttgg |
2671755 |
T |
|
| Q |
308 |
cttttctaacataagacaattcctatgctaattactatatcgttatattgtaatatagttaaatcctttttt |
379 |
Q |
| |
|
||||| |||||| |||||||||||| ||||||| ||| |||||||||||||||| ||| |||||| |
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| T |
2671754 |
tttttcaaacatagcacaattcctatgttaattac-----ggttctattgtaatatagttacatcttttttt |
2671688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 212 - 395
Target Start/End: Original strand, 2624311 - 2624492
Alignment:
| Q |
212 |
ggtgaaattgaaaagaaaattgagaagaggttcagggaaattggtttcaccttagcttcttaaaaatttcatttctacaatcatcaaaattgtaggcttt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||| |
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|
| T |
2624311 |
ggtgaaattgaaaagaaaattgagaagaagttcagagaaattggtttcaccttagcttccaaaaaat--catttctacaatcatcaaaattgtaggtttt |
2624408 |
T |
|
| Q |
312 |
tctaacataagacaattcctatgctaattactatatcgttatattgtaatatagttaaatccttttttcaactaagtataatct |
395 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||| || |||| ||||||||| |
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| T |
2624409 |
tctaacataacacaatttatatgctaattactatatgtttatattgtaatatagttaaatccttttctctactatgtataatct |
2624492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 2440647 - 2440872
Alignment:
| Q |
13 |
tgagaaaggaacacattcatctttgttgtctaaagggccaagtggaacatattactctttgataagtctacaaagaagaccaacgaacataattgttgat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| || ||||||| |||| |
|
|
| T |
2440647 |
tgagaaaggaacacattcatctttgttgtctaaagggccaagtggagcatattactctttggtaagtctacaaagaagaccaaacaatataattgctgat |
2440746 |
T |
|
| Q |
113 |
tcttcacatgaaatcaactaaataaacaatatcaagtttttcatgtttgaaggggagaagcaacaaagaggagttgatgatgtagttgttgtggtaatag |
212 |
Q |
| |
|
|||| |||||||| ||||||||||||| |||||| ||| ||||||| || || |||||| | |||| || ||||||||| |||||||||||||||| |
|
|
| T |
2440747 |
tcttgccatgaaattaactaaataaacatgatcaag-tttccatgttt-aaaggtagaagctatgaagaagaattgatgatggagttgttgtggtaatat |
2440844 |
T |
|
| Q |
213 |
gtgaaattgaaaagaaaattgagaagagg |
241 |
Q |
| |
|
|||||||| ||||||||| |||||||||| |
|
|
| T |
2440845 |
gtgaaatt-aaaagaaaaatgagaagagg |
2440872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 2624137 - 2624311
Alignment:
| Q |
13 |
tgagaaaggaacacattcatctttgttgtctaaagggccaagtggaacatattactctttgataagtctacaaagaagaccaacgaacataattgttgat |
112 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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|
| T |
2624137 |
tgagaatggaacacattcatccttgttgtctaaagggccaagtggagcatattactctttgataagtctacaaaaaagaccaaccaacataattgttgat |
2624236 |
T |
|
| Q |
113 |
tcttcacatgaaatcaactaaataaacaatatcaagtttttcatgtttgaaggggagaagcaacaaagaggagttg |
188 |
Q |
| |
|
||| |||||||||| || ||||||||||||||| |||||| ||||||||| |||||||| |||||||| |||||| |
|
|
| T |
2624237 |
tctccacatgaaattaaataaataaacaatatcttgtttttaatgtttgaa-gggagaagtaacaaagatgagttg |
2624311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 285
Target Start/End: Complemental strand, 2596236 - 2595962
Alignment:
| Q |
13 |
tgagaaaggaacacattcatctttgttgtctaaagggccaagtggaacatattactctttgataagtctacaaagaagac--caacgaacataattgttg |
110 |
Q |
| |
|
|||||||||||||||||| |||||||| ||| || ||||||||| |||||||||||| |||||||||||||||||| ||| || | |||||||| |
|
|
| T |
2596236 |
tgagaaaggaacacattcgtctttgttatctttgggaccaagtggagtttattactctttggtaagtctacaaagaagactataaccaatacaattgttg |
2596137 |
T |
|
| Q |
111 |
attcttcacatgaaatcaactaaataaacaatatcaagtttttcatgtttgaaggggagaagcaac-aaagaggagttgatgatgtagttgt-tgtggta |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||| || || ||| |||||||||| ||||||||| || ||| | || || |||||| |||||| | ||||| |
|
|
| T |
2596136 |
attcttcacatgaaatcaactaaataaacaaggtccag-tttccatgtttgaa-gggagaagctacaaaaaaagaatttatgatggagttgtgtttggta |
2596039 |
T |
|
| Q |
209 |
ataggtgaaattgaaaagaaaattgagaagaggttcagggaaattggtttcaccttagcttcttaaaaatttcattt |
285 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||| ||| ||||| | || | |||||||| ||||||||||||| |
|
|
| T |
2596038 |
ataggtaaaattgaaaagaaaaatgagaagaggtttaggaaaattagatttcctttagcttccgaaaaatttcattt |
2595962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 230 - 321
Target Start/End: Original strand, 2624631 - 2624722
Alignment:
| Q |
230 |
attgagaagaggttcagggaaattggtttcaccttagcttcttaaaaatttcatttctacaatcatcaaaattgtaggcttttctaacataa |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||| |
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|
| T |
2624631 |
attgagaagaggttcagggaaattggtttcaccttagcttcctaaaaatttcatttctacaattatgaaaattgtaggcttttctaacataa |
2624722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 2640888 - 2640705
Alignment:
| Q |
17 |
aaaggaacacattcatctttgttgtctaaagggccaagtggaacatattactctttgataagtctacaaagaagaccaacgaacataattgttgattctt |
116 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||| ||||||||||| |||||||||||||||||||||| || | |||||||| ||||| |
|
|
| T |
2640888 |
aaaggaacacattcatctttgttgtctttgggaccaagtggagtttattactctttagtaagtctacaaagaagaccaaccaatacaattgttggttctt |
2640789 |
T |
|
| Q |
117 |
cacatgaaatcaactaaataaacaatatcaagtttttcatgtttgaaggggagaagcaacaaagaggagttgatgatgtagttgtt |
202 |
Q |
| |
|
||||||||||||||||||||||||| || | |||| |||||||||| || |||||| ||||| | || || |||||| ||||||| |
|
|
| T |
2640788 |
cacatgaaatcaactaaataaacaaggtcga-ttttccatgtttgaa-ggaagaagctacaaaaaagaatttatgatggagttgtt |
2640705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 331 - 393
Target Start/End: Original strand, 2634879 - 2634941
Alignment:
| Q |
331 |
tatgctaattactatatcgttatattgtaatatagttaaatccttttttcaactaagtataat |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2634879 |
tatgctaattactatatcgttatattgtaatatagttaaatccttttttcaactaagtataat |
2634941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 2451369 - 2451450
Alignment:
| Q |
13 |
tgagaaaggaacacattcatctttgttgtctaaagggccaagtggaacatattactctttgataagtctacaaagaagacca |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||| || |||||||||||||||||||| |
|
|
| T |
2451369 |
tgagaaaggaacacattcatctttgttgtctaaaggaccaagtggagcttattactctatggtaagtctacaaagaagacca |
2451450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 331 - 393
Target Start/End: Complemental strand, 5130 - 5068
Alignment:
| Q |
331 |
tatgctaattactatatcgttatattgtaatatagttaaatccttttttcaactaagtataat |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5130 |
tatgctaattactatatcgttatattgtaatatagttaaatccttttttcaactaagtataat |
5068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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