View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1632_low_29 (Length: 383)
Name: NF1632_low_29
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1632_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 28553603 - 28553979
Alignment:
| Q |
1 |
tgtaatagtatcatctgaatccatgcttagggagttcttattaggggaggcattgttatatattagtacgtagtctaattagatgattagtaaagttttt |
100 |
Q |
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| T |
28553603 |
tgtaatagtataatctgaatccatg-----ggagttctgattaggggaggcattgttatatattagtacgtagtctaattagatgattagtaaagttttt |
28553697 |
T |
|
| Q |
101 |
ggcttaagtcttggcagattacttggaatacaagcaacctaggccttgcatctaatacttgtacttggctataaataagcctctattctatcattgtgga |
200 |
Q |
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| T |
28553698 |
ggcttaagtcttggcagattacttggaatacaagcaacctaggccttgcatctaatacttgtacttggctataaataagcctctattctatcattgtgga |
28553797 |
T |
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| Q |
201 |
attgaatgaaacactccttaaatctcccaaaaatagtttgg----------------attgtcatattagtctctgaccataataaacctacaaataaat |
284 |
Q |
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| T |
28553798 |
attgattgaaacactccttaaatctcccaaaaatagtttggatttacagtgttaggcattgtcatattagtctctgaccataataaacctacaaataaat |
28553897 |
T |
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| Q |
285 |
cttctttgttttaacttagagtgaagtacgattgaattctttgctaattgtttatcttgatcattgtacagggacaagaacc |
366 |
Q |
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| T |
28553898 |
cttctttgttttaacttagagtgaagtacgattgaattctttgctaattgtttatcttgatcattgtacagggacaagaacc |
28553979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 2660956 - 2661041
Alignment:
| Q |
79 |
ttagatgattagtaaagtttttggcttaagtcttggcagattacttggaatacaagcaacctaggcc-ttgcatctaatacttgta |
163 |
Q |
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| T |
2660956 |
ttagatgattagtgaaagttttagcttaagtcttgacagattacatggaatacgagtaatcaaggcctttgcatctaatacttgta |
2661041 |
T |
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