View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1632_low_3 (Length: 685)
Name: NF1632_low_3
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1632_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 618; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 4 - 669
Target Start/End: Complemental strand, 26276077 - 26275412
Alignment:
| Q |
4 |
cgactgagaagaatcttacgaaaaggggctgtaagattgtgtcaattttctgtttctgtcatcaacatgaagaaaaatccactcatatattcttcagctg |
103 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26276077 |
cgactgatgagaatcttacgaaaaggggctgtaagattgtgtcaattttctgtttctgtcatcaacatgaagaaaaatccactcatatattcttcagctg |
26275978 |
T |
|
| Q |
104 |
cccagaaacgcagaagctttggcagaggttgtgtactgggattgaccaaggcccggactgctccggtggctgaatgtgattgacagttgtgttggtaatt |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26275977 |
cccagaaacgcagaagctttggcagaggttgtgtactgggattgaccaaggcccggactgctccggtggctgaatgtgattgacagttgtgttggtaatt |
26275878 |
T |
|
| Q |
204 |
ggagcaaacaggttcagcaggtgttgatagcagcagttctgcacattatctggaggacttggatagaacgtaatgatagatatttcaataataatgcgca |
303 |
Q |
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| T |
26275877 |
gaagcaaacaggttcagcaggtgttgatagcagcagttctgcacattatctggaggacttggatagaacgtaatgatagatatttcaataataatgcgca |
26275778 |
T |
|
| Q |
304 |
ttcgatggaacatctgtttcggagtgttattgtggaagtaggctgtagcttcaacataattcaagcttctaaatctgctatgctggatgccaaattatca |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26275777 |
ttcgatggaacatctgtttcggagtgttattgtggaagtaggctgtagcttcaacataattcaagcttctaaatctgctatgctggatgccaaattatca |
26275678 |
T |
|
| Q |
404 |
catctgtttgacctatatctgagctggcatttataaaggaaaaattggatgccaacttaaacttgcaaatgacaatgaagaattgggatggctagaaact |
503 |
Q |
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| T |
26275677 |
catctgtttgacctatatctgagctggcatttataaaggaaaaattggatactaacataaacttgcaaatgacaatgaagaattgggttggctagaaact |
26275578 |
T |
|
| Q |
504 |
tgtattcacgtgctcttggatcacaactcaatgttgcaaatataaattgcggcgactgcaatcgtagcacttcgatacaggtacgatacattgcatgtaa |
603 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
26275577 |
tgtattcacgtgctcttggatcacatctcaatgttgcaaatataaattgcggcgactgcaatcgtagcgcttcgatacaggtacgatgcattgcatgtaa |
26275478 |
T |
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| Q |
604 |
ctgttgagacatttaagttttagatgtacatcagtgccaaaatacatgtcataaacccgcaacata |
669 |
Q |
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| T |
26275477 |
ctgttgagacattgaagttttagatctacatcagtgccaaaatacatgtcataaacccgcaacata |
26275412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 191 - 316
Target Start/End: Complemental strand, 39397955 - 39397830
Alignment:
| Q |
191 |
tgtgttggtaattggagcaaacaggttcagcaggtgttgatagcagcagttctgcacattatctggaggacttggatagaacgtaatgatagatatttca |
290 |
Q |
| |
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||||||||||||||||||||| ||| ||||| || || |||||||| |||||||||| | |||| || || ||||||||||||||| | ||||||| |
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| T |
39397955 |
tgtgttggtaattggagcaaagcggtgcagcaagtcttaatagcagcggttctgcacacggtttggaagatttagatagaacgtaatgagcgttatttca |
39397856 |
T |
|
| Q |
291 |
ataataatgcgcattcgatggaacat |
316 |
Q |
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| T |
39397855 |
ataataaggcgaattcgttggaacat |
39397830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 43673469 - 43673411
Alignment:
| Q |
54 |
tgtttctgtcatcaacatgaagaaaaatccactcatatattcttcagctgcccagaaac |
112 |
Q |
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||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||| |
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| T |
43673469 |
tgtttctgtcatcaacatgaagaaacctccagtcatattttcttcagctgcccagaaac |
43673411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 295
Target Start/End: Original strand, 23893197 - 23893301
Alignment:
| Q |
191 |
tgtgttggtaattggagcaaacaggttcagcaggtgttgatagcagcagttctgcacattatctggaggacttggatagaacgtaatgatagatatttca |
290 |
Q |
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||||||||||||||||||||| ||| ||||| || || ||||||||||||||||||| | |||| || ||| ||||| |||||||| | ||||||| |
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| T |
23893197 |
tgtgttggtaattggagcaaagcggtgcagcaagtcttaatagcagcagttctgcacacagtttggaagatttgaatagatcgtaatgagcgttatttca |
23893296 |
T |
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| Q |
291 |
ataat |
295 |
Q |
| |
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||||| |
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| T |
23893297 |
ataat |
23893301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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