View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1632_low_33 (Length: 367)
Name: NF1632_low_33
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1632_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 11676031 - 11676381
Alignment:
| Q |
1 |
gttcaattgttctaggtggaatcaattcaggatcccaacaaacaaagtagatgtccccgtcaagatcacttccggaacattcatttggatgcggcctggt |
100 |
Q |
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| T |
11676031 |
gttcaattgttctaggtggaatcaattcaggatcccaacaaacaaagtagatgtccccgtcaagatcacttccggaacattcatttggatgcggcctggt |
11676130 |
T |
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| Q |
101 |
attagaaatcagttattagtgtagacacagttttaaaggnnnnnnnnt-ttgccaataaagagaagcaacatcttaatttccatttgccaattaacatta |
199 |
Q |
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| T |
11676131 |
ataagaaatcagttattagtgtagacacagttttaaagggaaaaaaaaattgccaataaagggaagcaacatcttaatttccatttgccaattaacatta |
11676230 |
T |
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| Q |
200 |
taaatgataaacatataactgcaaattattcaaagcctacttctctaaatgataatgtattattttgcaagaagtatcagcagcataattcacatagaaa |
299 |
Q |
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| T |
11676231 |
taaatgattaacatataactgcaaattattcaaagcctacttctctaaatgataatgtattattttgcaagaagtatcagcagcataattcacatagaaa |
11676330 |
T |
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| Q |
300 |
tgaagtattttgctctctaatcattttcaccaagttgatttactcaaattt |
350 |
Q |
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| T |
11676331 |
tgaagtatttcgctctctaatcattttcaccaagttgatttactcaaattt |
11676381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 11683763 - 11684115
Alignment:
| Q |
1 |
gttcaattgttctaggtggaatcaattcaggatcccaacaaacaaagtagatgtccccgtcaagatcacttccggaacattcatttggatgcggcctggt |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
11683763 |
gttcaattgttctaggtggaatcaattcagaatcccagcaaacaaagtatatgtccccgtctagatcacttccggaacattcatttggatgtggcctggt |
11683862 |
T |
|
| Q |
101 |
attagaaatcagttattagtgtagaca--cagttttaaaggnnnnnnnnt-ttgccaataaagagaagcaacatcttaatttccatttgccaat-taaca |
196 |
Q |
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||||||||||||||||||||||||||| |||||||||| | ||||| ||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
11683863 |
attagaaatcagttattagtgtagacagacagttttaaaagaaaaaaaaaattgccgataaagagaagcaacatcttaatttccatttaccaaagtaaca |
11683962 |
T |
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| Q |
197 |
ttataaatgataaacatataactgcaaattattcaaagcctacttctctaaatgataatgtattattttgcaagaagtatcagcagcataattcacatag |
296 |
Q |
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|| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| || | |||| |
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| T |
11683963 |
ttctatatgataaacctataactgcaaattattcaaagcctacttctctaaatgataatgtatt-ttttgcaagaagtaccagcagcatatttaatatag |
11684061 |
T |
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| Q |
297 |
aaatgaagtattttgctctctaatcattttcaccaagttgatttactcaaattt |
350 |
Q |
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| T |
11684062 |
aaatgaagtattttgctatctaatcattttcaccaagttgatttactaaaattt |
11684115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 15 - 127
Target Start/End: Complemental strand, 11630479 - 11630367
Alignment:
| Q |
15 |
ggtggaatcaattcaggatcccaacaaacaaagtagatgtccccgtcaagatcacttccggaacattcatttggatgcggcctggtattagaaatcagtt |
114 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11630479 |
ggtggaatcaattcagaatcccaacaaacaaagtagatgtccccgtctagatcacttccggaacattcatttggatgtggcctggtattagaaatcagtt |
11630380 |
T |
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| Q |
115 |
attagtgtagaca |
127 |
Q |
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|| |||||||||| |
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| T |
11630379 |
atgagtgtagaca |
11630367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 11638851 - 11638755
Alignment:
| Q |
15 |
ggtggaatcaattcaggatcccaacaaacaaagtagatgtccccgtcaagatcacttccggaacattcatttggatgcggcctggtattagaaatca |
111 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||| || |||||||| ||||||||||||||||||| |
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| T |
11638851 |
ggtggaatcaattcagaatcccaacaaacaaagtagatgtccccatctagatcacttccggaacactcgtttggatgtggcctggtattagaaatca |
11638755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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