View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1632_low_34 (Length: 362)
Name: NF1632_low_34
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1632_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 2041516 - 2041174
Alignment:
| Q |
1 |
aggttaaaatccattagggttgcagtgaaaaacatatctaatacttttactcattgagtttttgttcctttgttttcgatccactgcttttgtttcgaag |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2041516 |
aggttaaaagccattagggttgcagtgaaaaacatatctaatacttttactcattgagtttttgttcctttgttttcgatccactgcttttgtttcgaag |
2041417 |
T |
|
| Q |
101 |
gaaacttgctattacgatgagaagggatgaagtatctgcgagaaagaagccatcatcatcactgcttttgtttcaaaggaatcctgttatgatgaaaaga |
200 |
Q |
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||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2041416 |
gaatctagctattacgatgagaagggacgaagtatctgcgagaaagaagccatcatcatcggtgcttttgtttcaaaggaatcctgttatgatgaaaaga |
2041317 |
T |
|
| Q |
201 |
aaggatcaaacacctttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgttagtcatgttgatcatcatatgcttgaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2041316 |
aaggatcaaacacctttggttgatctttgtgttgagaaaggtattgataatgtaaaataccttggagatgttagtcatgttgatcatgatatgcttgaga |
2041217 |
T |
|
| Q |
301 |
aagtcttgcctcactgcacacttgatcagttgatgcatattga |
343 |
Q |
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| T |
2041216 |
gaatcttgcctcactgcacacttgaccagttgatgcatattga |
2041174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 110 - 343
Target Start/End: Original strand, 1352250 - 1352483
Alignment:
| Q |
110 |
tattacgatgagaagggatgaagtatctgcgagaaagaagccatcatcatcactgcttttgtttcaaaggaatcctgttatgatgaaaagaaaggatcaa |
209 |
Q |
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||||| ||||||||| |||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1352250 |
tattatgatgagaagagatgaaatatctgcgagaaggaagccatcatcatcggtgcttttgtttcaaaggaatcctgttatgatgaaaagaaaggatcaa |
1352349 |
T |
|
| Q |
210 |
acacctttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgttagtcatgttgatcatcatatgcttgagaaagtcttgc |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
1352350 |
acacctttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgttagtcatgttgatcatcatatgcttgagagaatcttgc |
1352449 |
T |
|
| Q |
310 |
ctcactgcacacttgatcagttgatgcatattga |
343 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
1352450 |
ctcactgcacacttgaacagttgatgcatattga |
1352483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 183 - 343
Target Start/End: Original strand, 1357444 - 1357604
Alignment:
| Q |
183 |
cctgttatgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgttagtcatgttg |
282 |
Q |
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|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1357444 |
cctgttatgatgaagagaaaggatcaaacatgtttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgttagtcatgttg |
1357543 |
T |
|
| Q |
283 |
atcatcatatgcttgagaaagtcttgcctcactgcacacttgatcagttgatgcatattga |
343 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||| |
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| T |
1357544 |
atcatcatatgcttgagagaatcttgcctcactgcacacttgaacagttgatgcatattga |
1357604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 237 - 343
Target Start/End: Original strand, 1364328 - 1364434
Alignment:
| Q |
237 |
aaagctattgataatgtaaaataccttggagatgttagtcatgttgatcatcatatgcttgagaaagtcttgcctcactgcacacttgatcagttgatgc |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||| |
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| T |
1364328 |
aaagctattgataatgtaaaataccttggagatgttagtcatgttgatcatcatatgcttgagagaatcttgcctcactgcacacttgaacagttgatgc |
1364427 |
T |
|
| Q |
337 |
atattga |
343 |
Q |
| |
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||||||| |
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| T |
1364428 |
atattga |
1364434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 161; Significance: 8e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 110 - 343
Target Start/End: Original strand, 36717295 - 36717516
Alignment:
| Q |
110 |
tattacgatgagaagggatgaagtatctgcgagaaagaagccatcatcatcactgcttttgtttcaaaggaatcctgttatgatgaaaagaaaggatcaa |
209 |
Q |
| |
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||||| |||||||||||||||| ||||||| |||||||||||||| | |||||||||||||||||||||||||||| |||||||||||| |
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| T |
36717295 |
tattatgatgagaagggatgaaatatctgcaagaaagaagccatcgt------------tgtttcaaaggaatcctgttatgatgaagagaaaggatcaa |
36717382 |
T |
|
| Q |
210 |
acacctttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgttagtcatgttgatcatcatatgcttgagaaagtcttgc |
309 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
36717383 |
acatctttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgttagtcatgttgatcatcatatgcttgagagaatcttgc |
36717482 |
T |
|
| Q |
310 |
ctcactgcacacttgatcagttgatgcatattga |
343 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
36717483 |
ctcactgcacacttgatcagttgatgcatattga |
36717516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 189 - 325
Target Start/End: Complemental strand, 24620630 - 24620494
Alignment:
| Q |
189 |
atgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgttagtcatgttgatcatc |
288 |
Q |
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|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24620630 |
atgatgaagagaaaggatcaaacatatttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgttagtcatgttgatcatc |
24620531 |
T |
|
| Q |
289 |
atatgcttgagaaagtcttgcctcactgcacacttga |
325 |
Q |
| |
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||||||||||| | |||||||||||||||||||||| |
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| T |
24620530 |
atatgcttgagtgaatcttgcctcactgcacacttga |
24620494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 217 - 340
Target Start/End: Complemental strand, 18180249 - 18180126
Alignment:
| Q |
217 |
tggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgttagtcatgttgatcatcatatgcttgagaaagtcttgcctcactg |
316 |
Q |
| |
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||||||||||||||||| | | |||||| |||||| ||| |||||||||| ||||| ||| ||||||||||||| ||||||| | ||||||| ||||| |
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| T |
18180249 |
tggttgatctttgtgttcaaacagctatagataatttaagataccttggaaatgttggtcctgttgatcatcatctgcttgaacgaatcttgccacactg |
18180150 |
T |
|
| Q |
317 |
cacacttgatcagttgatgcatat |
340 |
Q |
| |
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||||||||| ||||||| |||||| |
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| T |
18180149 |
cacacttgaccagttgacgcatat |
18180126 |
T |
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