View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1632_low_35 (Length: 356)
Name: NF1632_low_35
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1632_low_35 |
 | |
|
| [»] chr8 (9 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 455261 - 454913
Alignment:
| Q |
1 |
tatagaccctcaaaatataaattttgatataacgtaatgctgcaaaatatcacaacaaaaataaacataaaagagtcaactttttatcaatttcacatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
455261 |
tatagaccctcaaaatataaattttgatataaagtaatgctgcaaaatatcccaacaaaaataaacataaaagagtcaactttttatcaatttcacatca |
455162 |
T |
|
| Q |
101 |
taacgataagcaccatattcatattgagaagaaaaagaaaaaggaaacaaacccaattagtgaggtcatgaaaatccaggaaaaacttgttaaatttaag |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
455161 |
taacgataagcacc--attcatattgagaagaaaaagaaaaaggaaacaaacccaattagtgaggtcatgaaaatccaggaaaaacttgttaaatttaag |
455064 |
T |
|
| Q |
201 |
gaataagagcgagagtttctcttctcctgtgnnnnnnnggaatagaaacaataaattacttaatagactttagataagaggaaaggatagataaggtggt |
300 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
455063 |
gaataagagcgagagt-----ttctcctgtgaaaaaaaggaatagaaacaataaattacttaataaactttagataagaggaaaggatagataaggtggt |
454969 |
T |
|
| Q |
301 |
gatagtaaaatatacccagataaataagcaatgggagcaagaagaatggttgcaaa |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
454968 |
gatagtaaaatatacccagataaataagcaatgggagcaagaagaatggttgcaaa |
454913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 466828 - 466750
Alignment:
| Q |
143 |
ggaaacaaacccaattagtgaggtcatgaaaatccaggaaaaacttgttaaatttaaggaataagagcgagagtttctc |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||| |||| |||||||||| |
|
|
| T |
466828 |
ggaaacaaacccaattagtgaggtcatgaaaatcaaggaaaaactccttaaattcaaggaatatgagccagagtttctc |
466750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 474295 - 474235
Alignment:
| Q |
161 |
tgaggtcatgaaaatccaggaaaaacttgttaaatttaaggaataagagcgagagtttctc |
221 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
474295 |
tgaggtcatgaaaatcaaggaaaaactccttaaatttaaggaataagaggcagagtttctc |
474235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 221
Target Start/End: Complemental strand, 446101 - 446016
Alignment:
| Q |
136 |
agaaaaaggaaacaaacccaattagtgaggtcatgaaaatccaggaaaaacttgttaaatttaaggaataagagcgagagtttctc |
221 |
Q |
| |
|
|||||| | ||||||||| ||||||||| |||||||| |||||||||||||| |||| |||||||| || ||| |||||||||| |
|
|
| T |
446101 |
agaaaatgaaaacaaacctaattagtgaagtcatgaatatccaggaaaaactccttaagtttaaggagtaggaggcagagtttctc |
446016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 467541 - 467485
Alignment:
| Q |
1 |
tatagaccctcaaaatataaattttgatataacgtaatgctgcaaaatatcacaaca |
57 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||| ||||| ||||| |
|
|
| T |
467541 |
tatagaccctcaaaatataaattttgattcaatgtaatgctgcaatatatcccaaca |
467485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 313 - 356
Target Start/End: Complemental strand, 474138 - 474095
Alignment:
| Q |
313 |
tacccagataaataagcaatgggagcaagaagaatggttgcaaa |
356 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
474138 |
tacccagagaaataagcaatgggagcaagaaaaatggttgcaaa |
474095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 479779 - 479701
Alignment:
| Q |
143 |
ggaaacaaacccaattagtgaggtcatgaaaatccaggaaaaacttgttaaatttaaggaataagagcgagagtttctc |
221 |
Q |
| |
|
|||||| ||||||||||||||||| | ||| | | | |||||||| ||||||||||||||||||||| ||| |||||| |
|
|
| T |
479779 |
ggaaactaacccaattagtgaggttaagaataacaaagaaaaactccttaaatttaaggaataagagccagaatttctc |
479701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 356
Target Start/End: Complemental strand, 445865 - 445829
Alignment:
| Q |
320 |
ataaataagcaatgggagcaagaagaatggttgcaaa |
356 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
445865 |
ataaataagcaattggagcaagaaaaatggttgcaaa |
445829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 446535 - 446507
Alignment:
| Q |
1 |
tatagaccctcaaaatataaattttgata |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
446535 |
tatagaccctcaaaatataaattttgata |
446507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 204
Target Start/End: Original strand, 27493542 - 27493602
Alignment:
| Q |
144 |
gaaacaaacccaattagtgaggtcatgaaaatccaggaaaaacttgttaaatttaaggaat |
204 |
Q |
| |
|
||||||||||||| |||||| || ||||| ||||| |||||||| ||||||||||||||| |
|
|
| T |
27493542 |
gaaacaaacccaactagtgaagtgatgaatatccaagaaaaactctttaaatttaaggaat |
27493602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University