View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1632_low_39 (Length: 315)
Name: NF1632_low_39
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1632_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 33903298 - 33903593
Alignment:
| Q |
1 |
ataccacattaccctggtggtttgaatttacaacacagtattgaatattggcttacattagatattcttgcttcagaattgccagaaatttatcctgcta |
100 |
Q |
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| T |
33903298 |
ataccacattaccctggtggtttgaatttacaacacagtattgaatattggcttacattagatattcttgcttcagaattgccagaaatttatcctgcta |
33903397 |
T |
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| Q |
101 |
gaattgtaaccagagttagaaactcgaccgaagctgatgttatatttgtgccannnnnnncatctttgacttataacagacactccaaaacaggtccaca |
200 |
Q |
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| T |
33903398 |
gaattgtaaccagagttagaaactcgaccgaagctgatgttatatttgtgccatttttttcatctttgacttataacagacactccaaaacaggtccaca |
33903497 |
T |
|
| Q |
201 |
tgaaaggaggagtagaaacaaggtgttgcaagagaagttggtgaggtatttgatgagtcaagaggaatggaagaggtcaggtggaagggatcattt |
296 |
Q |
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| T |
33903498 |
tgaaaggaggagtagaaacaaggtgttgcaagagaagttggtgaggtatttgatgaatcaagaggaatggaagaggtcaggtggaagggatcattt |
33903593 |
T |
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Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 9327859 - 9327790
Alignment:
| Q |
9 |
ttaccctggtggtttgaatttacaacacagtattgaatattggcttacattagatattcttgcttcagaa |
78 |
Q |
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||||||||| ||||||||||| ||||| ||||| |||| ||||||||||||||| |||||||| |||||| |
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| T |
9327859 |
ttaccctggaggtttgaatttgcaacatagtatagaattttggcttacattagacattcttgcctcagaa |
9327790 |
T |
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