View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1632_low_4 (Length: 651)
Name: NF1632_low_4
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1632_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 622; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 8 - 637
Target Start/End: Original strand, 33115959 - 33116588
Alignment:
| Q |
8 |
gagcacagacactcatagcactttgcagtactgttcctggttactggttcacagtggcactcattgatagaattggaagatttacaatccaattgatggg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33115959 |
gagcacagacactcatagcactttgcagtactgttcctggttactggttcacagtggcactcattgatagaattggaagatttacaatccaattgatggg |
33116058 |
T |
|
| Q |
108 |
atttttcttcatgaccgttttcatgtttggattggccattccatatcaccattggaccatgaatggaaaccaaattggttttgttgtcatgtattcattg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
33116059 |
atttttcttcatgaccgttttcatgtttggattggccattccatatcaccattggaccatgaaaggaaaccaaattggttttgttgtcatgtattcattg |
33116158 |
T |
|
| Q |
208 |
acattcttctttgctaattttggtccaaatgcaacgacgtttgtggttccggcagagattttcccggcaaggctaaggtcaacatgtcatggtatatccg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33116159 |
acattcttctttgctaattttggtccaaatgcaacgacgtttgtggttccggcagagattttcccggcaaggctaaggtcaacatgtcatggtatatccg |
33116258 |
T |
|
| Q |
308 |
ctgctgctggaaaagctggagcaatggtaggtgcttttggtttcttgtatgctcaaaatgcaattggagtgagaaatgtgcttatgcttttgggtgtggc |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
33116259 |
ctgctgctggaaaagctggagcaatggtaggtgcttttggtttcttgtatgctcaaaatgcaattggagtgagaaatgtgcttctgcttttgggtgtggc |
33116358 |
T |
|
| Q |
408 |
caatttcttggggatgatgtttacattcttggttcctgaatctaaaggaaaatctttggaagaaatttctggtgaagctgaggaagaaactttggaggct |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33116359 |
caatttcttggggatgatgtttacattcttggttcctgaatctaaaggaaaatctttggaagaaatttctggtgaagctgaggaagaaactttggaggct |
33116458 |
T |
|
| Q |
508 |
ggtattcaagtttaggacctttatttcttaattgagtaattaattttttaagtagtttgtaggaagaaactaggcattgaagttgtagtatttctttatt |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33116459 |
ggtattcaagtttaggacctttatttcttaattgagtaattaattttttaagtagtttgtaggaagaaactaggcattgaagttgtagtatttctttatt |
33116558 |
T |
|
| Q |
608 |
tagtttttcttgacattcatgtgtttggtt |
637 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
33116559 |
tagtttttcttgacattcatgtgtttggtt |
33116588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 101 - 360
Target Start/End: Original strand, 16184911 - 16185170
Alignment:
| Q |
101 |
tgatgggatttttcttcatgaccgttttcatgtttggattggccattccatatcaccattggaccatgaatggaaaccaaattggttttgttgtcatgta |
200 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||| | | ||||| |||||| | ||||||| || | | | || |||||| |||||||| ||||| |
|
|
| T |
16184911 |
tgatgggattcttcttcatgactgttttcatgtttgcacttgccataccatatgatcattggagcaaggaagagaatagaattgggtttgttgtaatgta |
16185010 |
T |
|
| Q |
201 |
ttcattgacattcttctttgctaattttggtccaaatgcaacgacgtttgtggttccggcagagattttcccggcaaggctaaggtcaacatgtcatggt |
300 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||| ||||| ||||| || |||||||||||||| ||||| ||||||||||| || |||||||| |
|
|
| T |
16185011 |
ctcactcacattcttctttgctaattttggtccaaatgctacgacatttgttgtaccggcagagatttttccggctaggctaaggtctacctgtcatgga |
16185110 |
T |
|
| Q |
301 |
atatccgctgctgctggaaaagctggagcaatggtaggtgcttttggtttcttgtatgct |
360 |
Q |
| |
|
|| || |||||||| ||||| || |||||||| || ||||| ||||| |||||||||||| |
|
|
| T |
16185111 |
atctcagctgctgcaggaaaggcaggagcaattgttggtgcatttggattcttgtatgct |
16185170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 101 - 360
Target Start/End: Complemental strand, 16174451 - 16174192
Alignment:
| Q |
101 |
tgatgggatttttcttcatgaccgttttcatgtttggattggccattccatatcaccattggaccatgaatggaaaccaaattggttttgttgtcatgta |
200 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||| | ||||| |||||| | ||||||| || | | | || |||||| |||||||| ||||| |
|
|
| T |
16174451 |
tgatgggattcttcttcatgactgttttcatgtttgctcttgccataccatatgatcattggagcaaggaagagaatagaattgggtttgttgtaatgta |
16174352 |
T |
|
| Q |
201 |
ttcattgacattcttctttgctaattttggtccaaatgcaacgacgtttgtggttccggcagagattttcccggcaaggctaaggtcaacatgtcatggt |
300 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||| || || ||||| || |||||||||||||| ||||| ||| ||||||| || |||||||| |
|
|
| T |
16174351 |
ctcactaacattcttctttgctaattttggtccaaatgctacaacatttgttgtaccggcagagatttttccggctaggttaaggtctacctgtcatgga |
16174252 |
T |
|
| Q |
301 |
atatccgctgctgctggaaaagctggagcaatggtaggtgcttttggtttcttgtatgct |
360 |
Q |
| |
|
||||| |||||||| ||||| || |||||||| || ||||| ||||| |||||||||||| |
|
|
| T |
16174251 |
atatcagctgctgcaggaaaggcaggagcaattgttggtgcatttggattcttgtatgct |
16174192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 101 - 360
Target Start/End: Original strand, 16224301 - 16224560
Alignment:
| Q |
101 |
tgatgggatttttcttcatgaccgttttcatgtttggattggccattccatatcaccattggaccatgaatggaaaccaaattggttttgttgtcatgta |
200 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||| | | ||||| |||||| | ||||||| || | | | || |||||| |||||||| || || |
|
|
| T |
16224301 |
tgatgggattcttcttcatgactgttttcatgtttgcacttgccataccatatgatcattggagcaaggaagagaatagaattgggtttgttgtaatata |
16224400 |
T |
|
| Q |
201 |
ttcattgacattcttctttgctaattttggtccaaatgcaacgacgtttgtggttccggcagagattttcccggcaaggctaaggtcaacatgtcatggt |
300 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||| ||||| ||||| || |||||||||||||| ||||| ||| ||||||| || |||||||| |
|
|
| T |
16224401 |
ctcactcacattcttctttgctaattttggtccaaatgctacgacatttgttgtaccggcagagatttttccggctaggttaaggtctacctgtcatgga |
16224500 |
T |
|
| Q |
301 |
atatccgctgctgctggaaaagctggagcaatggtaggtgcttttggtttcttgtatgct |
360 |
Q |
| |
|
|| || |||||||| ||||| || |||||||| || ||||| ||||| |||||||||||| |
|
|
| T |
16224501 |
atctcagctgctgcaggaaaggcaggagcaattgttggtgcatttggattcttgtatgct |
16224560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 8 - 360
Target Start/End: Original strand, 33109918 - 33110270
Alignment:
| Q |
8 |
gagcacagacactcatagcactttgcagtactgttcctggttactggttcacagtggcactcattgatagaattggaagatttacaatccaattgatggg |
107 |
Q |
| |
|
||||||| || || |||||| | |||||||| || || ||||||||||| ||||||||| | || ||| || || | ||| | |||||||||||||| |
|
|
| T |
33109918 |
gagcacaaacccttatagcattgtgcagtacagtgccaggttactggtttacagtggcatttatcgattacatgggtcgttttgcgatccaattgatggg |
33110017 |
T |
|
| Q |
108 |
atttttcttcatgaccgttttcatgtttggattggccattccatatcaccattggaccatgaatggaaaccaaattggttttgttgtcatgtattcattg |
207 |
Q |
| |
|
|| |||||||||||||| |||||||||| | || || || ||| | |||||||| | ||| | |||| |||||| |||||||| ||||| ||||| |
|
|
| T |
33110018 |
tttcttcttcatgaccgtcttcatgtttgctctagctataccttatgatcattggactaagaaagaaaacagaattgggtttgttgtaatgtactcatta |
33110117 |
T |
|
| Q |
208 |
acattcttctttgctaattttggtccaaatgcaacgacgtttgtggttccggcagagattttcccggcaaggctaaggtcaacatgtcatggtatatccg |
307 |
Q |
| |
|
|| ||||| ||||| ||||| ||||||||||| || || ||||| ||||| || |||||||||||||||||||| || || || ||||| || || || | |
|
|
| T |
33110118 |
actttcttttttgccaatttcggtccaaatgctaccacatttgttgttccagccgagattttcccggcaaggcttagatctacctgtcacggaatctcag |
33110217 |
T |
|
| Q |
308 |
ctgctgctggaaaagctggagcaatggtaggtgcttttggtttcttgtatgct |
360 |
Q |
| |
|
||||||| ||||| ||||||||||| || ||||| ||||| || || |||||| |
|
|
| T |
33110218 |
ctgctgcaggaaaggctggagcaattgttggtgcatttggatttttatatgct |
33110270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 31 - 136
Target Start/End: Complemental strand, 30620049 - 30619944
Alignment:
| Q |
31 |
tgcagtactgttcctggttactggttcacagtggcactcattgatagaattggaagatttacaatccaattgatgggatttttcttcatgaccgttttca |
130 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||| || || || || || |||||||||||||| ||||| ||||| | |
|
|
| T |
30620049 |
tgcagtacagttcctggttactggttcacagttgcattcattgatagaattggaaggttcactattcagttaatgggatttttctttatgacagttttta |
30619950 |
T |
|
| Q |
131 |
tgtttg |
136 |
Q |
| |
|
|||||| |
|
|
| T |
30619949 |
tgtttg |
30619944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 34 - 136
Target Start/End: Complemental strand, 30615292 - 30615190
Alignment:
| Q |
34 |
agtactgttcctggttactggttcacagtggcactcattgatagaattggaagatttacaatccaattgatgggatttttcttcatgaccgttttcatgt |
133 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || || || || || |||||||| ||||| ||||| ||||| |||| |
|
|
| T |
30615292 |
agtacagttcctggttactggttcacagtggcactcattgatagaatgggaaggttcactattcagttaatgggattcttctttatgacagtttttatgt |
30615193 |
T |
|
| Q |
134 |
ttg |
136 |
Q |
| |
|
||| |
|
|
| T |
30615192 |
ttg |
30615190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 8e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 103 - 360
Target Start/End: Complemental strand, 37315032 - 37314775
Alignment:
| Q |
103 |
atgggatttttcttcatgaccgttttcatgtttggattggccattccatatcaccattggaccatgaatggaaaccaaattggttttgttgtcatgtatt |
202 |
Q |
| |
|
|||||||| ||||| ||||| || |||||||||| | || ||||| ||| | |||||||| | || | |||| |||||| ||| |||| ||||| |
|
|
| T |
37315032 |
atgggattcttctttatgactgtgttcatgtttgcgctcgctattccgtatgatcattggactaagagagaaaacagaattggatttcttgttatgtacg |
37314933 |
T |
|
| Q |
203 |
cattgacattcttctttgctaattttggtccaaatgcaacgacgtttgtggttccggcagagattttcccggcaaggctaaggtcaacatgtcatggtat |
302 |
Q |
| |
|
|| |||| || |||||||| ||||||||||||||| |||| || ||||| || || || |||||||||||||| ||| | ||||| |||||||||||||| |
|
|
| T |
37314932 |
caatgacttttttctttgcaaattttggtccaaattcaaccacttttgttgtacctgccgagattttcccggctaggttgaggtctacatgtcatggtat |
37314833 |
T |
|
| Q |
303 |
atccgctgctgctggaaaagctggagcaatggtaggtgcttttggtttcttgtatgct |
360 |
Q |
| |
|
|||| |||| || || |||||||||||||| ||||||| ||||| ||||| |||||| |
|
|
| T |
37314832 |
atcctctgcagcagggaaagctggagcaattataggtgcatttggattcttatatgct |
37314775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 31 - 269
Target Start/End: Original strand, 38884837 - 38885075
Alignment:
| Q |
31 |
tgcagtactgttcctggttactggttcacagtggcactcattgatagaattggaagatttacaatccaattgatgggatttttcttcatgaccgttttca |
130 |
Q |
| |
|
|||||||| ||||| ||||| ||||| || ||||| |||| || ||||| ||||||||||| ||||||||||||||||| ||||| ||||| | |||| |
|
|
| T |
38884837 |
tgcagtacagttccaggttattggtttaccgtggctttcatagacagaataggaagatttaccatccaattgatgggattcttctttatgactgccttca |
38884936 |
T |
|
| Q |
131 |
tgtttggattggccattccatatcaccattggac-catgaatggaaaccaaattggttttgttgtcatgtattcattgacattcttctttgctaattttg |
229 |
Q |
| |
|
|||||| | |||||||| ||| | || ||||| ||| || | ||||| ||| || ||||| || || ||||| ||||| ||||||||||| ||||||| |
|
|
| T |
38884937 |
tgtttgctcttgccattccttatgaacactggactcat-aaggaaaaccgaataggatttgtggtgatatattccttgaccttcttctttgcaaattttg |
38885035 |
T |
|
| Q |
230 |
gtccaaatgcaacgacgtttgtggttccggcagagatttt |
269 |
Q |
| |
|
| || ||||| || || ||||| || || ||||||||||| |
|
|
| T |
38885036 |
ggcctaatgctacaacatttgttgtgccagcagagatttt |
38885075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 31 - 153
Target Start/End: Original strand, 38894023 - 38894145
Alignment:
| Q |
31 |
tgcagtactgttcctggttactggttcacagtggcactcattgatagaattggaagatttacaatccaattgatgggatttttcttcatgaccgttttca |
130 |
Q |
| |
|
|||||||| ||||| || |||||||| || ||||| |||||||| || || ||||| |||| |||||||||||||||||| ||||| ||||| || |||| |
|
|
| T |
38894023 |
tgcagtacagttccaggctactggtttacggtggctctcattgacaggataggaaggtttaaaatccaattgatgggattcttctttatgactgtcttca |
38894122 |
T |
|
| Q |
131 |
tgtttggattggccattccatat |
153 |
Q |
| |
|
|||||| | |||||||||||| |
|
|
| T |
38894123 |
tgtttgctcttgccattccatat |
38894145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 347
Target Start/End: Complemental strand, 28816730 - 28816639
Alignment:
| Q |
256 |
ccggcagagattttcccggcaaggctaaggtcaacatgtcatggtatatccgctgctgctggaaaagctggagcaatggtaggtgcttttgg |
347 |
Q |
| |
|
||||||||| | || || |||||||| | || ||||||||||| ||||||||||| ||||||||| | ||||| || || ||||||||||| |
|
|
| T |
28816730 |
ccggcagagctgtttcctgcaaggctccgttcgacatgtcatgggatatccgctgcagctggaaaatcaggagctatagtcggtgcttttgg |
28816639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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