View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1632_low_42 (Length: 309)
Name: NF1632_low_42
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1632_low_42 |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 2592333 - 2592614
Alignment:
| Q |
19 |
gatacactgtgtggtgatagaggagttcaacttagtggtggtaaaaaacaaagaattgcaatagctagagctatattgaagaatccagaggtgttgcttt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2592333 |
gatacactgtgtggtgatagaggagttcaacttagtggtggtcaaaaacaaagaattgcaatagctagagctatattgaagaatccagaggtgttgcttt |
2592432 |
T |
|
| Q |
119 |
tggatgaagcaacaagtgcacttgatagtcaatctgagaaattagtccaagatgctttagaaaaggtcatggttggaaggacaagcgtggttgtagcaca |
218 |
Q |
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|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2592433 |
tggatgaagcaacaagtgcacttgatagtcaatcagagaaattagtccaagatgctttagaaaaggtcatggttggaaggacaagcgtggttgtagcaca |
2592532 |
T |
|
| Q |
219 |
taggttgagtactatccaaaactgtgatttgattgctgttttggataagggaagtgttgttgagaaaggaacacattcatct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2592533 |
taggttgagtactatccaaaactgtgatttgattgctgttttggataagggaagtgttattgagaaaggaacacattcatct |
2592614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 2440387 - 2440668
Alignment:
| Q |
19 |
gatacactgtgtggtgatagaggagttcaacttagtggtggtaaaaaacaaagaattgcaatagctagagctatattgaagaatccagaggtgttgcttt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2440387 |
gatacactgtgtggtgatagaggagttcaacttagtggtggtcaaaaacaaagaattgcaatagctagagctatattgaagaatccagaggtgttgcttt |
2440486 |
T |
|
| Q |
119 |
tggatgaagcaacaagtgcacttgatagtcaatctgagaaattagtccaagatgctttagaaaaggtcatggttggaaggacaagcgtggttgtagcaca |
218 |
Q |
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|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2440487 |
tggatgaagcaacaagtgcacttgatagtcaatcagagaaattagtccaagatgctttagaaaaggtcatggttggaaggacaagcgtggttgtagcaca |
2440586 |
T |
|
| Q |
219 |
taggttgagtactatccaaaactgtgatttgattgctgttttggataagggaagtgttgttgagaaaggaacacattcatct |
300 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
2440587 |
taggttgagtactattcaaaactgtgatttgattgctgttttggataagggaattgttgttgagaaaggaacacattcatct |
2440668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 26 - 299
Target Start/End: Original strand, 2623884 - 2624157
Alignment:
| Q |
26 |
tgtgtggtgatagaggagttcaacttagtggtggtaaaaaacaaagaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatga |
125 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
2623884 |
tgtgtggtgacagaggagttcaacttagtggtggtcaaaaacaaagaattgcaatagctagagctatattaaagaatccagatgtgttgcttttggatga |
2623983 |
T |
|
| Q |
126 |
agcaacaagtgcacttgatagtcaatctgagaaattagtccaagatgctttagaaaaggtcatggttggaaggacaagcgtggttgtagcacataggttg |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2623984 |
agcaacaagtgcacttgatagtcaatctgagaaattagtccaagacactttagaaaaggtcatggttggaaggacaagcgtggttgtagcacataggttg |
2624083 |
T |
|
| Q |
226 |
agtactatccaaaactgtgatttgattgctgttttggataagggaagtgttgttgagaaaggaacacattcatc |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
2624084 |
agtactatccaaaactgtgatttgattgctgttttggataagggaagtgttgttgagaatggaacacattcatc |
2624157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 2568937 - 2568659
Alignment:
| Q |
19 |
gatacactgtgtggtgatagaggagttcaacttagtggtggtaaaaaacaaagaattgcaatagctagagctatattgaagaatccagaggtgttgcttt |
118 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2568937 |
gatacattgtgtggtgatagaggagttcaacttagtggtggtcaaaaacaaagaattgcaatagctagagctatattgaagaatccagaggtgttgcttt |
2568838 |
T |
|
| Q |
119 |
tggatgaagcaacaagtgcacttgatagtcaatctgagaaattagtccaagatgctttagaaaaggtcatggttggaaggacaagcgtggttgtagcaca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||| ||||| |
|
|
| T |
2568837 |
tggatgaagcaacaagtgcacttgatagtcaatctgagaaattagtccaagatgctttagaaagggttatggttggaaggacaagtgtggttgtggcaca |
2568738 |
T |
|
| Q |
219 |
taggttgagtactatccaaaactgtgatttgattgctgttttggataagggaagtgttgttgagaaaggaacacattca |
297 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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|
| T |
2568737 |
taggttgagtactatacaaaattgtgatttgattgctgttttggataagggcattgttgttgagaaaggaacacattca |
2568659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 26 - 300
Target Start/End: Complemental strand, 2672305 - 2672031
Alignment:
| Q |
26 |
tgtgtggtgatagaggagttcaacttagtggtggtaaaaaacaaagaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatga |
125 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2672305 |
tgtgtggtgacagaggagttcaacttagtggtggtcaaaaacaaagaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatga |
2672206 |
T |
|
| Q |
126 |
agcaacaagtgcacttgatagtcaatctgagaaattagtccaagatgctttagaaaaggtcatggttggaaggacaagcgtggttgtagcacataggttg |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2672205 |
agcaacaagtgcacttgatagtcaatctgagaaattagtccaagatgctttagaaagggttatggttggaaggacaagtgtggttgtagcacataggttg |
2672106 |
T |
|
| Q |
226 |
agtactatccaaaactgtgatttgattgctgttttggataagggaagtgttgttgagaaaggaacacattcatct |
300 |
Q |
| |
|
|||||||| ||||| || ||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2672105 |
agtactatacaaaattgcgatttgattgctgttttagacaagggaagtgttgttgagaaaggaacacattcatct |
2672031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 296
Target Start/End: Complemental strand, 2596496 - 2596219
Alignment:
| Q |
19 |
gatacactgtgtggtgatagaggagttcaacttagtggtggtaaaaaacaaagaattgcaatagctagagctatattgaagaatccagaggtgttgcttt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2596496 |
gatacactgtgtggtgatagaggagttcaacttagtggtggtcaaaaacaaagaattgcaatagctagagctatattgaagaatccagaggtgttgcttt |
2596397 |
T |
|
| Q |
119 |
tggatgaagcaacaagtgcacttgatagtcaatctgagaaattagtccaagatgctttagaaaaggtcatggttggaaggacaagcgtggttgtagcaca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||| ||||||||||||||||| |||||||| ||||| |
|
|
| T |
2596396 |
tggatgaagcaacaagtgcacttgatagtcaatcagagaaattagtccaagatactttagaaagggttatggttggaaggacaagtgtggttgtggcaca |
2596297 |
T |
|
| Q |
219 |
taggttgagtactatccaaaactgtgatttgattgctgttttggataagggaagtgttgttgagaaaggaacacattc |
296 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2596296 |
taggttgagtactatacaaaattgtgatttgattgctgtcttggataagggaattgttgttgagaaaggaacacattc |
2596219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 300
Target Start/End: Complemental strand, 2641152 - 2640871
Alignment:
| Q |
19 |
gatacactgtgtggtgatagaggagttcaacttagtggtggtaaaaaacaaagaattgcaatagctagagctatattgaagaatccagaggtgttgcttt |
118 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
2641152 |
gatacattgtgtggtgatagaggagttcaacttagtggtggtcaaaaacaaaggattgcaatagctagagctatattgaagaatccaaaggtgttacttt |
2641053 |
T |
|
| Q |
119 |
tggatgaagcaacaagtgcacttgatagtcaatctgagaaattagtccaagatgctttagaaaaggtcatggttggaaggacaagcgtggttgtagcaca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| || ||||||||||||||||| || ||||| ||||| |
|
|
| T |
2641052 |
tggatgaagcaacaagtgcacttgatagtcaatcagagaaattagtgcaagatgctttagaaagagttatggttggaaggacaagtgtagttgtcgcaca |
2640953 |
T |
|
| Q |
219 |
taggttgagtactatccaaaactgtgatttgattgctgttttggataagggaagtgttgttgagaaaggaacacattcatct |
300 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||| |
|
|
| T |
2640952 |
taggttgagtactatacaaaattgtgatttgattgctgttttggataaggggattgttgttgaaaaaggaacacattcatct |
2640871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 26 - 300
Target Start/End: Original strand, 2451116 - 2451390
Alignment:
| Q |
26 |
tgtgtggtgatagaggagttcaacttagtggtggtaaaaaacaaagaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatga |
125 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2451116 |
tgtgtggtgatagaggagttcaactttctggtggtcaaaagcaaaggattgcaatagctagagctatattgaagaatccaaaggtgttgcttttggatga |
2451215 |
T |
|
| Q |
126 |
agcaacaagtgcacttgatagtcaatctgagaaattagtccaagatgctttagaaaaggtcatggttggaaggacaagcgtggttgtagcacataggttg |
225 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| ||| ||| ||||||| ||||| |||||||| || ||||||||| |
|
|
| T |
2451216 |
agcaacaagtgcacttgatagtcaatcagagaagttagtgcaagatgctttagaaagggttatgattggaagaacaagtgtggttgtggctcataggttg |
2451315 |
T |
|
| Q |
226 |
agtactatccaaaactgtgatttgattgctgttttggataagggaagtgttgttgagaaaggaacacattcatct |
300 |
Q |
| |
|
|||||||| ||||| |||||| |||||| ||||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
2451316 |
agtactatacaaaattgtgatatgattgttgttttggataagggtagtgttattgagaaaggaacacattcatct |
2451390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 62 - 260
Target Start/End: Complemental strand, 17870305 - 17870107
Alignment:
| Q |
62 |
aaaaacaaagaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatctgagaaatt |
161 |
Q |
| |
|
|||||||||| || |||||||||||||| || |||||||||||| ||||||||||| | ||||||||||||||||||||||||| | | || || || | |
|
|
| T |
17870305 |
aaaaacaaaggatagcaatagctagagccatgttgaagaatccaaaggtgttgcttctagatgaagcaacaagtgcacttgataataattcagaaaaggt |
17870206 |
T |
|
| Q |
162 |
agtccaagatgctttagaaaaggtcatggttggaaggacaagcgtggttgtagcacataggttgagtactatccaaaactgtgatttgattgctgtttt |
260 |
Q |
| |
|
||| |||||||| || | ||||| |||||||||||||| || |||||||||||||||||||||||||| || || || |||||| | ||||||||||| |
|
|
| T |
17870205 |
agtgcaagatgcattgaataaggtaatggttggaaggactagtgtggttgtagcacataggttgagtaccatacacaattgtgatgttattgctgtttt |
17870107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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