View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1632_low_49 (Length: 266)
Name: NF1632_low_49
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1632_low_49 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 159 - 266
Target Start/End: Original strand, 33903154 - 33903261
Alignment:
| Q |
159 |
aacgacaccaagagcaataacaataaaagcaacgctgttttgaaagttttcatgtatgatctacctcccgagtttcatttcgggttattagattggaaag |
258 |
Q |
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| T |
33903154 |
aacgacaccaagagcaataacaataaaagcaacgctgttttgaaagttttcatgtatgatttacctcccgagtttcatttcgggttattagattggaaag |
33903253 |
T |
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| Q |
259 |
gcgatgaa |
266 |
Q |
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|||||||| |
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| T |
33903254 |
gcgatgaa |
33903261 |
T |
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Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 33903017 - 33903089
Alignment:
| Q |
22 |
acgacggttcatatttggtaacatctcaatcacaaaactctgaatcctccttcagcaatagagcaatccttgt |
94 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33903017 |
acgacggttcagatttggtaacatctcaatcacaaaactctgaatcctccttcagcaatagagcaatccttgt |
33903089 |
T |
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