View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1632_low_5 (Length: 605)
Name: NF1632_low_5
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1632_low_5 |
 | |
|
| [»] scaffold0927 (1 HSPs) |
| | |
|
| [»] scaffold1126 (1 HSPs) |
| | |
|
| [»] scaffold1033 (1 HSPs) |
| | |
|
| [»] scaffold1029 (1 HSPs) |
| | |
|
| [»] scaffold0870 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 425; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 13 - 595
Target Start/End: Original strand, 24069713 - 24070289
Alignment:
| Q |
13 |
aatatttcctagtataaattacaaaatcaatatgttatacataaacaacagatcacaatatttgagtatgtactaattgcatccagcaccaacattaatc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24069713 |
aatatttcctagtataaattacaaaatcaatatgttatacataaacaacagatcacaatatatgagtatgtactaattgcatccaacaccaacattaatc |
24069812 |
T |
|
| Q |
113 |
aatgacttgacatgttcctggagattagagagacttgagttgctcttatagtggtacatgaggagaaccattcttgcagcattgagacaaaaattggaaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24069813 |
aatgacttgacatgttcctggagattagagaggcttgagttgctcttatagtggtacatgaggagaaccattcttgcagcattgagacaaaaattggaaa |
24069912 |
T |
|
| Q |
213 |
atgatgatgaaaactgatttgtgaccagaatttcttgattcagacatttccattcatttgaaatcatgcgagcaacatgtctttgcacctcttcgccgga |
312 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24069913 |
atgatgatgaaaacttatttgtgaccagaatttcttgattgagacatttccattcatttgaaatcatgcgagcaacatgtctttgcacctcttcgccgga |
24070012 |
T |
|
| Q |
313 |
aatatcttggtgttcactcatgtagcaatcaaggtatgacccatcaagaccattttgatctccactctgcattcatccatg----ataattcttatcatt |
408 |
Q |
| |
|
||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
24070013 |
aatatcttggtgttcactcttgaagcaatcaagatatgacccatcaagaccattttgatcaccactctgcattcatccatggataataattcttatcatt |
24070112 |
T |
|
| Q |
409 |
agaactttacttttaacaattgagttaattggttgaacaatttaatcaaatatttgtttaatattctatcttagagacatatttctcaccttagctcctt |
508 |
Q |
| |
|
|||||||||| ||||||| ||||| |||| ||| ||||||| |||||| | || | | ||| | ||||||||||||| ||||||||||||| |
|
|
| T |
24070113 |
agaactttacatttaacagttgag-taatcggtagaacaatataatca--------tccaaga-tatatttgggagacatatttcttaccttagctcctt |
24070202 |
T |
|
| Q |
509 |
ctaaatcatcagagagacgaagaattttcgccactgaatatatgacatttggaaatttttcatccaagatatcaattgtctcctttg |
595 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
24070203 |
ctaaatcatcagagagacgaagaatttttgccaccgaatatatgacatttggaaatttttcatccaagatatcaactgtctcctttg |
24070289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 42 - 595
Target Start/End: Complemental strand, 24080994 - 24080447
Alignment:
| Q |
42 |
atatgttatacataaacaacagatcacaatatttgagtatgtactaattgcatccagcaccaacattaatcaatgacttgacatgttcctggagattaga |
141 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
24080994 |
atatgttgtacataaacaacagattacaatatttgaaactgtactaattgcatccaacaccaacattaatcaataacttgacatgttcctagagattaga |
24080895 |
T |
|
| Q |
142 |
gagacttgagttgctcttatagtggtacatgaggagaaccattcttgcagcattgagacaaaaattggaaaatgatgatgaaaactgatttgtgaccaga |
241 |
Q |
| |
|
|| || | ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
24080894 |
taggctagggttgctcttatagtggtacatgaggggaaccattcttgcagcattgatacaaaaattggaaaatgatgatgaaaacttatttgcaaccaga |
24080795 |
T |
|
| Q |
242 |
atttcttgattcagacatttccattcatttgaaatcatgcgagcaacatgtctttgcacctcttcgccggaaatatcttggtgttcactcatgtagcaat |
341 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
24080794 |
atttcttgattgagacatttccattcatttgaaatcatgcgagcaacatgtctttgcacgtcttccccggaaatatcttggtgttcactcatgaagcaat |
24080695 |
T |
|
| Q |
342 |
caaggtatgacccatcaagaccattttgatctccactctgcattcatccatg----ataattcttatcattagaactttacttttaacaattgagttaat |
437 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||| ||||| |||| |
|
|
| T |
24080694 |
caagatatgacccatcaagaccattttgatctccactctacattcatccatggataataattcttatcattagaactttacatttaacagttgag-taat |
24080596 |
T |
|
| Q |
438 |
tggttgaacaatttaatcaaatatttgtttaatattctatcttagagacatatttctcaccttagctccttctaaatcatcagagagacgaagaattttc |
537 |
Q |
| |
|
||| ||||||| |||||| | || | | ||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24080595 |
cggtagaacaatataatca--------tccaaga-tatatttgggagacatatttcttaccttagctccttctaaatcatcagagagacgaagaattttt |
24080505 |
T |
|
| Q |
538 |
gccactgaatatatgacatttggaaatttttcatccaagatatcaattgtctcctttg |
595 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
24080504 |
gccaccgaatatatgacatttggaaaattttcatccaagatatcaactgtctcctttg |
24080447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 315 - 427
Target Start/End: Complemental strand, 30399754 - 30399638
Alignment:
| Q |
315 |
tatcttggtgttcactcatgtagcaatcaaggtatgacccatcaagaccattttgatctccactctgcattcatccatg----ataattcttatcattag |
410 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| ||||| ||||||||||||||||||| | ||||||||||||| |||| ||||||| ||||||||| |
|
|
| T |
30399754 |
tatcttggtgttcattcatgtaataatcaagatatgatccatcaagaccattttgatatatactctgcattcatgcatggataataattcatatcattag |
30399655 |
T |
|
| Q |
411 |
aactttacttttaacaa |
427 |
Q |
| |
|
||| | || |||||||| |
|
|
| T |
30399654 |
aacatgacatttaacaa |
30399638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 13 - 587
Target Start/End: Original strand, 28573021 - 28573597
Alignment:
| Q |
13 |
aatatttcctagtataaattacaaaatcaatatgttatacataaacaacagatcacaatatttgagtatgtactaattgcatccagcaccaacattaatc |
112 |
Q |
| |
|
|||||| |||| | |||||||||||||||||||||| ||||||||||||||| |||||||| ||| ||||||||||| || ||| ||| |||||||||| |
|
|
| T |
28573021 |
aatattgcctaatttaaattacaaaatcaatatgttgtacataaacaacagaacacaatatctgaaaatgtactaattacacccaacactaacattaatc |
28573120 |
T |
|
| Q |
113 |
aatgacttgacatgttcctggagattagagagacttgagttgctcttatagtggtacatgaggagaaccattcttgcagcattgagacaaaaattggaaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28573121 |
aatgacttgacatgttcctggagattagagaggcttgggttgctcttatagtggtacatgaggggaaccattcttgcagcattgagacaaaagttggaaa |
28573220 |
T |
|
| Q |
213 |
atgatgatgaaaactgatttgtgaccagaatttcttgattcagacatttccattcatttgaaatcatgcgagcaacatgtctttgcacctcttcgccgga |
312 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| |
|
|
| T |
28573221 |
atgacgatgaaaactgatttgcaaccagaatttcttgattgagacatttccattcatttgaaatcatgtgagcaacatgtctttgcacgtcttcaccgga |
28573320 |
T |
|
| Q |
313 |
aatatcttggtgttcactcatgtagcaatcaaggtatgacccatcaagaccattttgatctccactctgcattcatccatg----ataattcttatcatt |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
28573321 |
aatatcttggtgttcactcatgtagcaatcaaggtatgacccatcaagaccattttgctctccactctgcattcattcatggataataattcttatcatt |
28573420 |
T |
|
| Q |
409 |
agaactttacttttaacaattgagttaattggttgaacaatttaatcaaatatttgtttaatattctatcttagagacatatttctcaccttagctcctt |
508 |
Q |
| |
|
|||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||| || | |||||||||||| ||||||||||||| |
|
|
| T |
28573421 |
agaactttacattttacaattgcgttaattggttgaacaatttaatcaaatatttgtttaatat--aatttaggagacatatttcataccttagctcctt |
28573518 |
T |
|
| Q |
509 |
ctaaatcatcagagagacgaagaattttcgccactgaatatatgacatttggaaatttttcatccaagatatcaattgt |
587 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28573519 |
ctaaatcatcagagagacgaagaatttttgccactgaatatatgacatttggaaacttttcatccaagatatcaattgt |
28573597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 36 - 587
Target Start/End: Original strand, 28584274 - 28584826
Alignment:
| Q |
36 |
aaatcaatatgttatacataaacaacagatcacaatatttgagtatgtactaattgcatccagcaccaacattaatcaatgacttgacatgttcctggag |
135 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||| ||||||||||| || ||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28584274 |
aaatcaatatgttgtacataaacaacagattacaatatttgaaaatgtactaattacacccaacactaacattaatcaatgacttgacatgttcctggag |
28584373 |
T |
|
| Q |
136 |
attagagagacttgagttgctcttatagtggtacatgaggagaaccattcttgcagcattgagacaaaaattggaaaatgatgatgaaaactgatttgtg |
235 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||| |||||||||| |||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28584374 |
attagagaggcttggtttgctcttatagtggtacatgaggggaaccattctagcagcattcagacaaaagttggaaaatgatgatgaaaactgatttgca |
28584473 |
T |
|
| Q |
236 |
accagaatttcttgattcagacatttccattcatttgaaatcatgcgagcaacatgtctttgcacctcttcgccggaaatatcttggtgttcactcatgt |
335 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||| |||||| ||||| | |||||||||||||||||||||||||| |
|
|
| T |
28584474 |
accagaatttcttgattgagaaatttccattcatttgaaatcatgtgagcaacatgtccttgcacgtcttcactggaaatatcttggtgttcactcatgt |
28584573 |
T |
|
| Q |
336 |
agcaatcaaggtatgacccatcaagaccattttgatctccactctgcattcatccatgataattcttatcattagaactttacttttaacaattgagtta |
435 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
28584574 |
agcaatcaaggtatgacccatcaagaccattttgatctccactctgcattcatccatgataattcttatcattagaactttacatttaacaatcgagtta |
28584673 |
T |
|
| Q |
436 |
attggttgaacaatttaatcaaatatttgtttaatattctatctta-gagacatatttctcaccttagctccttctaaatcatcagagagacgaagaatt |
534 |
Q |
| |
|
| |||||||||||||||||| |||| ||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28584674 |
agtggttgaacaatttaatcgaatacttgtttaatattctaatttaggagacatatttcataccttagctccttctaaatcatcagagagacgaagaatt |
28584773 |
T |
|
| Q |
535 |
ttcgccactgaatatatgacatttggaaatttttcatccaagatatcaattgt |
587 |
Q |
| |
|
|| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28584774 |
tttgccactgaatatatgacatttggaaacttttcatccaagatatcaattgt |
28584826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 28 - 595
Target Start/End: Original strand, 26314181 - 26314747
Alignment:
| Q |
28 |
aaattacaaaatcaatatgttatacataaacaaca--gatcacaatatttgagtatgtactaattgcatccagcaccaacattaatcaatgacttgacat |
125 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||| ||| ||| | ||||||||||||||||||||| |
|
|
| T |
26314181 |
aaattacaaaatcaatatgttgtacataaacaactatgatcacaatatttgaaaatgtactaattgcacccaccactagcattaatcaatgacttgacat |
26314280 |
T |
|
| Q |
126 |
gttcctggagattagagagacttgagttgctcttatagtggtacatgaggagaaccattcttgcagcattgagacaaaaattggaaaatgatgatgaaaa |
225 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26314281 |
gttcctggagattagagaggcttggattgctcttatagtggtacatgaggggaaccattctagcagcattgagacaaaaattggaaaatgatgatgaaaa |
26314380 |
T |
|
| Q |
226 |
ctgatttgtgaccagaatttcttgattcagacatttccattcatttgaaatcatgcgagcaacatgtctttgcacctcttcgccggaaatatcttggtgt |
325 |
Q |
| |
|
||||||| ||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
26314381 |
ttgatttgcaaccagaatttcttgattgagacgtttccattcatttgaaatcatgtgagcaacatgtctttgcacgtcttcaccggaaatatcttggtgt |
26314480 |
T |
|
| Q |
326 |
tcactcatgtagcaatcaaggtatgacccatcaagaccattttgatctccactctgcattcatccatgataattcttatcattagaactttacttttaac |
425 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||| ||| ||||||| ||||||||||||| |||||| |
|
|
| T |
26314481 |
tcactcatgtagcaatcaagatatgaaccatcaagaccattttgatctccactctgcaatcat----gatggttcttataattagaactttacatttaac |
26314576 |
T |
|
| Q |
426 |
aattgagttaattggttgaacaatttaatcaaatatttgtttaatattctatcttag-agacatatttctcaccttagctccttctaaatcatcagagag |
524 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
26314577 |
aattgagttaattggttgaacaatttaatcaaatacttgtttaattttctaatttaggagacatatttcttaccttagctccttctaaatcatcagagag |
26314676 |
T |
|
| Q |
525 |
acgaagaattttcgccactgaatatatgacatttggaaatttttcatccaagatatcaattgtctcctttg |
595 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26314677 |
acgaagaattttcgccactgaatatatgacatttgggaatttttcatccaagatatcaattgtctcctttg |
26314747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 80 - 595
Target Start/End: Original strand, 28566343 - 28566859
Alignment:
| Q |
80 |
atgtactaattgcatccagcaccaacattaatcaatgacttgacatgttcctggagattagagagacttgagttgctcttatagtggtacatgaggagaa |
179 |
Q |
| |
|
|||||||||||||| ||| ||| ||||||||||||||| || ||||||||||||||||||||||| || | ||||||||||||||||||||||||| ||| |
|
|
| T |
28566343 |
atgtactaattgcacccaacactaacattaatcaatgagttaacatgttcctggagattagagaggctcgggttgctcttatagtggtacatgaggggaa |
28566442 |
T |
|
| Q |
180 |
ccattcttgcagcattgagacaaaaattggaaaatgatgatgaaaactgatttgtgaccagaatttcttgattcagacatttccattcatttgaaatcat |
279 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
28566443 |
ccattctagcagcattgagacaaaaattggaaaatgatgatgaaaactgatttgtgaccagaatttcttgattgagacatttccattcatttgaaatcat |
28566542 |
T |
|
| Q |
280 |
gcgagcaacatgtctttgcacctcttcgccggaaatatcttggtgttcactcatgtagcaatcaaggtatgacccatcaagaccattttgatctccactc |
379 |
Q |
| |
|
| |||||||||||| |||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28566543 |
gtgagcaacatgtcgttgcacgtcttcactggaaatatcttggtgttcactcatgtagcaatcaaggtatgacccatcaagaccattttgatctccactc |
28566642 |
T |
|
| Q |
380 |
tgcattcatccatgataattcttatcattagaactttacttttaacaattgagttaattggttgaacaatttaatcaaatatttgtttaatattctatct |
479 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||| |||| ||||||||||||||| | |
|
|
| T |
28566643 |
tgcattcatccatgataactcttatcattagaactttacatttaacaatcgagttaagtggttgaacaatttaatcgaatacttgtttaatattctaatt |
28566742 |
T |
|
| Q |
480 |
ta-gagacatatttctcaccttagctccttctaaatcatcagagagacgaagaattttcgccactgaatatatgacatttggaaatttttcatccaagat |
578 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| || |||||||||||||| |
|
|
| T |
28566743 |
taggagacatatttcttaccttagctccttctaaatcatcagagagacgaagaatttttgccactgaatatataacatttgggaaattttcatccaagat |
28566842 |
T |
|
| Q |
579 |
atcaattgtctcctttg |
595 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
28566843 |
atcaattgtctcctttg |
28566859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 107 - 386
Target Start/End: Original strand, 20615035 - 20615314
Alignment:
| Q |
107 |
ttaatcaatgacttgacatgttcctggagattagagagacttgagttgctcttatagtggtacatgaggagaaccattcttgcagcattgagacaaaaat |
206 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||| |||| |||||||||||| ||||||||||| |||||||||| |||||||| || ||||||| |
|
|
| T |
20615035 |
ttaatcaatgacttgacatgttcctttagactagagaggcttgggttgctcttataatggtacatgagaggaaccattctagcagcattaaggcaaaaat |
20615134 |
T |
|
| Q |
207 |
tggaaaatgatgatgaaaactgatttgtgaccagaatttcttgattcagacatttccattcatttgaaatcatgcgagcaacatgtctttgcacctcttc |
306 |
Q |
| |
|
||| ||||||||||| ||| || || | || |||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||| ||||| |
|
|
| T |
20615135 |
tggtaaatgatgatggaaatacatatgggttcaaaatttcttgatttagacatttccattcatttaaaatcatctcagcaacatgtctttgcacatcttc |
20615234 |
T |
|
| Q |
307 |
gccggaaatatcttggtgttcactcatgtagcaatcaaggtatgacccatcaagaccattttgatctccactctgcattc |
386 |
Q |
| |
|
| |||||||||||||| |||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
20615235 |
acatgaaatatcttggtgctcactcatgtagcaattaagatatgatccatcaagaccattttgatctccactctgtattc |
20615314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 490 - 579
Target Start/End: Original strand, 20615835 - 20615924
Alignment:
| Q |
490 |
tttctcaccttagctccttctaaatcatcagagagacgaagaattttcgccactgaatatatgacatttggaaatttttcatccaagata |
579 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||| |||||| |||||| |
|
|
| T |
20615835 |
tttcttaccttaactccttctaaatcatcagagagacgaagaatttttgccactgaataaatgatatttggaaattcttcatctaagata |
20615924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 315 - 371
Target Start/End: Original strand, 21642346 - 21642402
Alignment:
| Q |
315 |
tatcttggtgttcactcatgtagcaatcaaggtatgacccatcaagaccattttgat |
371 |
Q |
| |
|
|||||||||||||| ||||||| |||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
21642346 |
tatcttggtgttcattcatgtaacaatcaagatatgatccatcaagaccgttttgat |
21642402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0927 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: scaffold0927
Description:
Target: scaffold0927; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 36 - 595
Target Start/End: Complemental strand, 654 - 91
Alignment:
| Q |
36 |
aaatcaatatgttatacataaacaacagatcacaatatttgagtatgtactaattgcatccagcaccaacattaatcaatgacttgacatgttcctggag |
135 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||| ||||| |||||||| ||| ||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
654 |
aaatcaatgtgttgtacataaacaacagatcacaatatttgaaaatgtattaattgcacccaacactaacattaatcaatgacttgacatgttcatggag |
555 |
T |
|
| Q |
136 |
attagagagacttgagttgctcttatagtggtacatgaggagaaccattcttgcagcattgagacaaaaattggaaaatgatgatgaaaactgatttgtg |
235 |
Q |
| |
|
||||||||| || | |||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
554 |
attagagaggctcggattgctcttatagtggtacatgaggggaaccattctagcagcattcagacaaaaattggaaaatgatgatgaaaactgatttgcg |
455 |
T |
|
| Q |
236 |
accagaatttcttgattcagacatttccattcatttgaaatcatgcgagcaacatgtctttgcacctcttcgccggaaatatcttggtgttcactcatgt |
335 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||| ||||| | ||||||||| || ||||||||||||| |
|
|
| T |
454 |
accataatttcttgattgagacatttccattcatttgaaatcatgtgagcaacatgtgtttgcacgtcttcactggaaatatcctgatgttcactcatgt |
355 |
T |
|
| Q |
336 |
agcaatcaaggtatgacccatcaagaccattttgatctccactctgcattcatcc----atgataattcttatcattagaactttacttttaacaattga |
431 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
354 |
agcaatcaagatatgacccgtcaagaccattttgatctccactctgcattcattcattgataataattcttatcattagaactttacattttacaattgt |
255 |
T |
|
| Q |
432 |
gttaattggttgaacaatttaatcaaatatttgtttaatattctatctta-gagacatatttctcaccttagctccttctaaatcatcagagagacgaag |
530 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||| ||| |||| |||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
254 |
gttaattggttgaacaatttaatcaaatacttgtttaa-attctaatttatgagatatatttcttaccttagctccttctaaatcatcagcgagacgaag |
156 |
T |
|
| Q |
531 |
aattttcgccactgaatatatgacatttggaaatttttcatccaagatatcaattgtctcctttg |
595 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
155 |
aatttttgccactgaatatataacatttggaaaattttcatccaagatatcagttgtctcctttg |
91 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1126 (Bit Score: 111; Significance: 1e-55; HSPs: 1)
Name: scaffold1126
Description:
Target: scaffold1126; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 2549 - 2722
Alignment:
| Q |
28 |
aaattacaaaatcaatatgttatacataaacaaca--gatcacaatatttgagtatgtactaattgcatccagcaccaacattaatcaatgacttgacat |
125 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||| ||| ||| | ||||||||||||||||||||| |
|
|
| T |
2549 |
aaattacaaaatcaatatgttgtacataaacaactatgatcacaatatttgaaaatgtactaattgcacccaccactagcattaatcaatgacttgacat |
2648 |
T |
|
| Q |
126 |
gttcctggagattagagagacttgagttgctcttatagtggtacatgaggagaaccattcttgcagcattgaga |
199 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
2649 |
gttcctggagattagagaggcttggattgctcttatagtggtacatgaggggaaccattctagcagcattgaga |
2722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033 (Bit Score: 105; Significance: 4e-52; HSPs: 1)
Name: scaffold1033
Description:
Target: scaffold1033; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 189 - 1
Alignment:
| Q |
13 |
aatatttcctagtataaattacaaaatcaatatgttatacataaacaacagatcacaatatttgagtatgtactaattgcatccagcaccaacattaatc |
112 |
Q |
| |
|
|||||| |||| | |||||||||||||||||||||| | ||||||||||| | ||||| ||||| || | ||||| || |||| |||||||||||||| |
|
|
| T |
189 |
aatattgcctaatttaaattacaaaatcaatatgttgtgcataaacaacataacacaaggtttgaaaatatgctaatcgcgtccaacaccaacattaatc |
90 |
T |
|
| Q |
113 |
aatgacttgacatgttcctggagattagagagacttgagttgctcttatagtggtacatgaggagaaccattcttgcagcattgagaca |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
89 |
aatgacttgacatgttcctggagattagagaggcttggattgctcttatagtggtacatgaggggaaccattctagcagcattgagaca |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029 (Bit Score: 105; Significance: 4e-52; HSPs: 1)
Name: scaffold1029
Description:
Target: scaffold1029; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 189 - 1
Alignment:
| Q |
13 |
aatatttcctagtataaattacaaaatcaatatgttatacataaacaacagatcacaatatttgagtatgtactaattgcatccagcaccaacattaatc |
112 |
Q |
| |
|
|||||| |||| | |||||||||||||||||||||| | ||||||||||| | ||||| ||||| || | ||||| || |||| |||||||||||||| |
|
|
| T |
189 |
aatattgcctaatttaaattacaaaatcaatatgttgtgcataaacaacataacacaaggtttgaaaatatgctaatcgcgtccaacaccaacattaatc |
90 |
T |
|
| Q |
113 |
aatgacttgacatgttcctggagattagagagacttgagttgctcttatagtggtacatgaggagaaccattcttgcagcattgagaca |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
89 |
aatgacttgacatgttcctggagattagagaggcttggattgctcttatagtggtacatgaggggaaccattctagcagcattgagaca |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 3e-43; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 103 - 387
Target Start/End: Complemental strand, 2603356 - 2603069
Alignment:
| Q |
103 |
aacattaatcaatgacttgacatgttcctggagattagagagacttgagttgctcttatagtggtacatgaggagaaccattcttgcagcattgagacaa |
202 |
Q |
| |
|
|||||||| ||||||||||||| | || || ||||| || ||||||| || |||| ||||| |||||||| |||||||||||||| |||| || ||| |
|
|
| T |
2603356 |
aacattaaccaatgacttgacaaggtcttgtagattggaaagacttggattactctggtagtgatacatgagaggaaccattcttgcaacattaaggcaa |
2603257 |
T |
|
| Q |
203 |
aaattggaaaatgatgatgaaaact---gatttgtgaccagaatttcttgattcagacatttccattcatttgaaatcatgcgagcaacatgtctttgca |
299 |
Q |
| |
|
|| |||| ||||||||| ||||| |||| | | | ||||||||||| |||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2603256 |
aatttggtaaatgatgacgaaaaaattggattcggggttatgatttcttgattgagacgtttccattcatttgaaatcatgttagcaacatgtctttgtg |
2603157 |
T |
|
| Q |
300 |
cctcttcgccggaaatatcttggtgttcactcatgtagcaatcaaggtatgacccatcaagaccattttgatctccactctgcattca |
387 |
Q |
| |
|
|||||| | ||||| |||||||||||| ||||||||||||| || ||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
2603156 |
cctcttgagctgaaatctcttggtgttcattcatgtagcaatctagatatgacccatcaagaccgttttgatctacactctgcattca |
2603069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 242 - 427
Target Start/End: Complemental strand, 2600064 - 2599877
Alignment:
| Q |
242 |
atttcttgattcagacatttccattcatttgaaatcatgcgagcaacatgtctttgcacctcttcgccggaaatatcttggtgttcactcatgtagcaat |
341 |
Q |
| |
|
|||||||| || |||| |||||||||||||||||||||| ||||||||| ||||| ||||||| | | |||||||||||||| ||||||| |||| |
|
|
| T |
2600064 |
atttcttgtttgagacgtttccattcatttgaaatcatgttagcaacatgcctttgtgcctcttcagttgtactatcttggtgttcattcatgtaacaat |
2599965 |
T |
|
| Q |
342 |
caagg-tatgacccatcaagaccattttgatctccactctgcatt-catccatgataattcttatcattagaactttacttttaacaa |
427 |
Q |
| |
|
||| | ||||| ||||||||||| ||||||||| |||||||||| |||| | ||||||| |||||||||||| | || |||||||| |
|
|
| T |
2599964 |
caaagatatgatccatcaagaccgttttgatctaaactctgcattgcatcgacaataattcatatcattagaacatgacatttaacaa |
2599877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 244 - 373
Target Start/End: Complemental strand, 2591928 - 2591799
Alignment:
| Q |
244 |
ttcttgattcagacatttccattcatttgaaatcatgcgagcaacatgtctttgcacctcttcgccggaaatatcttggtgttcactcatgtagcaatca |
343 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||||||||| ||||| |||||| | ||||| |||||||||| ||||||| |||||| |
|
|
| T |
2591928 |
ttcttgattcagacgtttccattcatttgaaatcatatgagcaacatgcctttgtgtctcttcagttgtaatattttggtgttcattcatgtaacaatca |
2591829 |
T |
|
| Q |
344 |
aggtatgacccatcaagaccattttgatct |
373 |
Q |
| |
|
|| ||||| ||||||||||| ||||||||| |
|
|
| T |
2591828 |
agatatgatccatcaagaccgttttgatct |
2591799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 496 - 561
Target Start/End: Complemental strand, 2602859 - 2602794
Alignment:
| Q |
496 |
accttagctccttctaaatcatcagagagacgaagaattttcgccactgaatatatgacatttgga |
561 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| |||||||| || |||||||| ||| ||||||| |
|
|
| T |
2602859 |
accttagctccttccaaatcatcagaaagacggagaatttttgctactgaatacatggtatttgga |
2602794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0870 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: scaffold0870
Description:
Target: scaffold0870; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 138 - 2
Alignment:
| Q |
13 |
aatatttcctagtataaattacaaaatcaatatgttatacataaacaacagatcacaatatttgagtatgtactaattgcatccagcaccaacattaatc |
112 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||| | || |||||||| | |||||| ||||| ||||||||||||| |||| ||||||| |||||| |
|
|
| T |
138 |
aatatttcctaattcaaattacaaaatcaatatgttgtgcagaaacaacataacacaatgtttgaaaatgtactaattgcgtccaacaccaacgttaatc |
39 |
T |
|
| Q |
113 |
aatgacttgacatgttcctggagattagagagacttg |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38 |
aatgacttgacatgttcctggagattagagaggcttg |
2 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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