View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1632_low_51 (Length: 258)
Name: NF1632_low_51
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1632_low_51 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 6e-86; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 26 - 246
Target Start/End: Complemental strand, 31906281 - 31906061
Alignment:
| Q |
26 |
actgcacgcttcaacacatcaaagtaactaggatgaaatttttctgttttaaaagctttccatgtaagcaatcgaagagcatctttttcgcttaacacat |
125 |
Q |
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|||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||| |
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| T |
31906281 |
actgcacgcttcaagacatcaaaataactaggatgaaatacttctgttttaaaagctttccatgtaagcaaccgaagagcatctttctcgtttaacacat |
31906182 |
T |
|
| Q |
126 |
ttacttcaaatgttctcttaaccgcgtgacttgacaacaaatgtttgtccctagttgtaataataactctgcttccagaaccaaaccaatcagatcctcc |
225 |
Q |
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|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
31906181 |
ttacttcatatgttctcttaaccccgtgacttgacaacaaatgtttgtccctagttgtaataataactctgcttccagaaccaagccaatagaatcctcc |
31906082 |
T |
|
| Q |
226 |
aaccaaggcttctagttgttc |
246 |
Q |
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||||||||| || |||||||| |
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| T |
31906081 |
aaccaaggcctccagttgttc |
31906061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 26 - 246
Target Start/End: Complemental strand, 35984526 - 35984306
Alignment:
| Q |
26 |
actgcacgcttcaacacatcaaagtaactaggatgaaatttttctgttttaaaagctttccatgtaagcaatcgaagagcatctttttcgcttaacacat |
125 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||| | ||| | |||| || | |
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| T |
35984526 |
actgcacgcttcaagacattcaagtaactaggatgaaatttttctgttttaaaagatttccaagtaagcaattgaagagcgtatttctaatttaaaacct |
35984427 |
T |
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| Q |
126 |
ttacttcaaatgttctcttaaccgcgtgacttgacaacaaatgtttgtccctagttgtaataataactctgcttccagaaccaaaccaatcagatcctcc |
225 |
Q |
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| T |
35984426 |
gtaattcatatgttatattaaccccatgactttccaacaaatgtttgtcccgagttgtaatgataactctgctgccagaaccaagccaatcaaaccctcc |
35984327 |
T |
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| Q |
226 |
aaccaaggcttctagttgttc |
246 |
Q |
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||||||||| ||||| ||||| |
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| T |
35984326 |
aaccaaggcctctagctgttc |
35984306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 218
Target Start/End: Complemental strand, 16441181 - 16441091
Alignment:
| Q |
128 |
acttcaaatgttctcttaaccgcgtgacttgacaacaaatgtttgtccctagttgtaataataactctgcttccagaaccaaaccaatcag |
218 |
Q |
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|||||| ||||||| | |||| | ||||||| | ||| |||||||||| ||||||||| ||||||||||| |||| |||| ||||||||| |
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| T |
16441181 |
acttcatatgttctttcaaccccatgacttgctagcaactgtttgtcccgagttgtaatgataactctgctaccaggaccataccaatcag |
16441091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 29523120 - 29523053
Alignment:
| Q |
163 |
caaatgtttgtccctagttgtaataataactctgcttccagaaccaaaccaatcagatcctccaacca |
230 |
Q |
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| T |
29523120 |
caaatgtttgtcgcaagttgtaacaataactctgctaccagaaccaaaccaatcagttcctccaacca |
29523053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 213
Target Start/End: Complemental strand, 17802150 - 17802100
Alignment:
| Q |
163 |
caaatgtttgtccctagttgtaataataactctgcttccagaaccaaacca |
213 |
Q |
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|||||| |||||||| ||||| ||||||||||||||||| ||||||||||| |
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| T |
17802150 |
caaatgcttgtcccttgttgtgataataactctgcttcctgaaccaaacca |
17802100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 17791204 - 17791151
Alignment:
| Q |
160 |
caacaaatgtttgtccctagttgtaataataactctgcttccagaaccaaacca |
213 |
Q |
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||||||||| || ||||| ||||| |||||||||||||| || ||||||||||| |
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| T |
17791204 |
caacaaatgcttatcccttgttgttataataactctgctgcccgaaccaaacca |
17791151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 18723192 - 18723241
Alignment:
| Q |
182 |
gtaataataactctgcttccagaaccaaaccaatcagatcctccaaccaa |
231 |
Q |
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||||| ||||||||||||||||| || |||||||||| ||||||| |||| |
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| T |
18723192 |
gtaatgataactctgcttccagagccgaaccaatcaggtcctccagccaa |
18723241 |
T |
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