View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1632_low_53 (Length: 255)
Name: NF1632_low_53
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1632_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 3856726 - 3856940
Alignment:
| Q |
19 |
aggcaccaccagatttagacaaaaacgaagataataattctagtgcttcattcaagaatttatacaccataatacaggttgttgatgttgatgaataaaa |
118 |
Q |
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| T |
3856726 |
aggcaccaccagatttagacaaaaacgaagataataattctagtgcttcattcaagaatttatacaccataatacaggttgttgatggtgatgaataaaa |
3856825 |
T |
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| Q |
119 |
atattttaaatagcatgaagttaattatcttatttatattcaactaatattaattcattctttcagtcggtgcaacaagatgaagaactgaaagcttttc |
218 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3856826 |
atattttaaatagcatgaag----ttatcttatttatattcaactaacattaattcattctttcagtcggtgcaacaagatgaagaactgaaagcttttc |
3856921 |
T |
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| Q |
219 |
agaaaacacactcccagaa |
237 |
Q |
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||||||||||||||||||| |
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| T |
3856922 |
agaaaacacactcccagaa |
3856940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 3865483 - 3865697
Alignment:
| Q |
19 |
aggcaccaccagatttagacaaaaacgaagataataattctagtgcttcattcaagaatttatacaccataatacaggttgttgatgttgatgaataaaa |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3865483 |
aggcaccaccagatttagacaaaaacgaagataataattctagtgcttcattcaagaatttatacaccataatacaggttgttgatggtgatgaataaaa |
3865582 |
T |
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| Q |
119 |
atattttaaatagcatgaagttaattatcttatttatattcaactaatattaattcattctttcagtcggtgcaacaagatgaagaactgaaagcttttc |
218 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3865583 |
atattttaaatagcatgaag----ttatcttatttatattcaactaacattaattcattctttcagtcggtgcaacaagatgaagaactgaaagcttttc |
3865678 |
T |
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| Q |
219 |
agaaaacacactcccagaa |
237 |
Q |
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||||||||||||||||||| |
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| T |
3865679 |
agaaaacacactcccagaa |
3865697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 60 - 226
Target Start/End: Complemental strand, 5441092 - 5440930
Alignment:
| Q |
60 |
agtgcttcattcaagaatttatacaccataatacaggttgttgatgttgatgaataaaaatattttaaatagcatgaagttaattatcttatttatattc |
159 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| |||| || ||||||||||||||||||||| || || ||| ||| ||||||||||| |
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| T |
5441092 |
agtgcttcattcaagaatttatacaccatagtacaggttgttaatgtcgacgaataaaaatattttaaatagtat-aaatta---atcctatttatattc |
5440997 |
T |
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| Q |
160 |
aactaatattaattcattctttcagtcggtgcaacaagatgaagaactgaaagcttttcagaaaaca |
226 |
Q |
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|||||| |||| | |||| ||| |||||||||| | || ||||||||| ||||||||||| |||||| |
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| T |
5440996 |
aactaacattagtgcatttttttagtcggtgcagcgaggtgaagaactaaaagcttttcaaaaaaca |
5440930 |
T |
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