View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1632_low_54 (Length: 252)
Name: NF1632_low_54
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1632_low_54 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 8924891 - 8924648
Alignment:
| Q |
1 |
ccacaaaatccaaaacaaaacccttaagccaaaactccttaaaatggcaacatggccttcaaaatggcatatgatctatagacatcacaaactagaatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8924891 |
ccacaaaatccaaaacaaaacccttaagccaaaactccttaaaatggcaacatgaccttcaaaatggcatatgatctatagacatcacaaactagaatga |
8924792 |
T |
|
| Q |
101 |
taatcttaaacttcctgccaaatgattttcataagaaaagagaggtgacacaacttagttaaaggaaacttcttcaaaaactgtttaaatctagggcatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8924791 |
taatcttaaacttcctgccaaatgattttcataagaaaagagaggtgacacaacttagttaaaggaaacttcttcaaaaactgtttaaatctagggcatc |
8924692 |
T |
|
| Q |
201 |
atatgaaccaagtaaatctaatattcatcatcagtatattcttc |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8924691 |
atatgaaccaagtaaatctaatattcatcatcagtatattcttc |
8924648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University