View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1632_low_56 (Length: 248)

Name: NF1632_low_56
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1632_low_56
NF1632_low_56
[»] chr7 (4 HSPs)
chr7 (203-237)||(7655167-7655201)
chr7 (185-229)||(30969776-30969820)
chr7 (185-222)||(7754218-7754255)
chr7 (185-229)||(19267367-19267411)
[»] chr3 (1 HSPs)
chr3 (185-223)||(41417170-41417208)
[»] chr5 (1 HSPs)
chr5 (185-230)||(18345722-18345767)
[»] chr6 (1 HSPs)
chr6 (185-229)||(14536142-14536186)
[»] chr4 (1 HSPs)
chr4 (185-229)||(23499436-23499480)


Alignment Details
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 237
Target Start/End: Complemental strand, 7655201 - 7655167
Alignment:
Q  203 ttgtaacaaactcgtgatttgtcatgacttgccta 237  Q
    |||||||||||||||||||||||||||||||||||    
T  7655201 ttgtaacaaactcgtgatttgtcatgacttgccta 7655167  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 30969776 - 30969820
Alignment:
Q  185 gaaaataaagggttgttattgtaacaaactcgtgatttgtcatga 229  Q
    |||||| |||||||||||||||||||||||| |||||||| ||||    
T  30969776 gaaaatcaagggttgttattgtaacaaactcatgatttgttatga 30969820  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 7754255 - 7754218
Alignment:
Q  185 gaaaataaagggttgttattgtaacaaactcgtgattt 222  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  7754255 gaaaatcaagggttgttattgtaacacactcgtgattt 7754218  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 19267411 - 19267367
Alignment:
Q  185 gaaaataaagggttgttattgtaacaaactcgtgatttgtcatga 229  Q
    |||||| ||||||||||||| |||||||||| |||||||| ||||    
T  19267411 gaaaatcaagggttgttattttaacaaactcatgatttgttatga 19267367  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 223
Target Start/End: Original strand, 41417170 - 41417208
Alignment:
Q  185 gaaaataaagggttgttattgtaacaaactcgtgatttg 223  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  41417170 gaaaatcaagggttgttattgtaacaaactcgtgatttg 41417208  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 18345722 - 18345767
Alignment:
Q  185 gaaaataaagggttgttattgtaacaaactcgtgatttgtcatgac 230  Q
    |||||| |||||||||||||| ||||||||| |||||||| |||||    
T  18345722 gaaaatcaagggttgttattgcaacaaactcatgatttgttatgac 18345767  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 14536142 - 14536186
Alignment:
Q  185 gaaaataaagggttgttattgtaacaaactcgtgatttgtcatga 229  Q
    |||||| || ||||||||||| |||||||||||||||||| ||||    
T  14536142 gaaaatcaaaggttgttattgcaacaaactcgtgatttgttatga 14536186  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 23499480 - 23499436
Alignment:
Q  185 gaaaataaagggttgttattgtaacaaactcgtgatttgtcatga 229  Q
    |||||| ||||||||||||| |||||||||| |||||||| ||||    
T  23499480 gaaaattaagggttgttattttaacaaactcatgatttgttatga 23499436  T

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