View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1632_low_59 (Length: 242)
Name: NF1632_low_59
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1632_low_59 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 10 - 224
Target Start/End: Original strand, 22138483 - 22138697
Alignment:
| Q |
10 |
attatactgcaacttgttcagaaaaaacactgtactttaattagataagcactggagtgaattatagtgcaacttgttcatcactatgatcggtagcagt |
109 |
Q |
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| T |
22138483 |
attatactgcaacttgttcagaaaaaacactgtactttaattagataagcactggagtgaattatagtgcaacttgttcatcactatgatcagtagcagt |
22138582 |
T |
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| Q |
110 |
tgttattaatttcaccaataaacaccacttaccgaaacacgatatccttgaagcaataaattgctgcatatgcctactaatatatcttggcaagaataat |
209 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22138583 |
tgttattaatttcaccaataaacaccacttaccgtaacacgatatccttgaagcaataaattgctgcatatgcctactaatatatcttggcaagaataat |
22138682 |
T |
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| Q |
210 |
gttgtcaacaatagt |
224 |
Q |
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||| ||||||||||| |
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| T |
22138683 |
gttatcaacaatagt |
22138697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 23 - 224
Target Start/End: Complemental strand, 18942005 - 18941804
Alignment:
| Q |
23 |
ttgttcagaaaaaacactgtactttaattagataagcactggagtgaattatagtgcaacttgttcatcactatgatcggtagcagttgttattaatttc |
122 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
18942005 |
ttgtccagaaaaaacactgtactttaattagataagcactggagtgaattatactgcaacttgttcatcactatgatcagtagcagttgttattaatttc |
18941906 |
T |
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| Q |
123 |
accaataaacaccacttaccgaaacacgatatccttgaagcaataaattgctgcatatgcctactaatatatcttggcaagaataatgttgtcaacaata |
222 |
Q |
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| T |
18941905 |
accaataaacaccacttaccgtaacacgatatccttgaagcaataaattgctgcatatgcctactaatatttcttggcaagaataatgttgtcaacaata |
18941806 |
T |
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| Q |
223 |
gt |
224 |
Q |
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|| |
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| T |
18941805 |
gt |
18941804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 58 - 224
Target Start/End: Original strand, 21964615 - 21964781
Alignment:
| Q |
58 |
gcactggagtgaattatagtgcaacttgttcatcactatgatcggtagcagttgttattaatttcaccaataaacaccacttaccgaaacacgatatcct |
157 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
21964615 |
gcactggagtgaattatactgcaacttgttcatcactatgatcagtagcagttgttattaatttcaccaataatcaccacttaccgtaacacgatatcct |
21964714 |
T |
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| Q |
158 |
tgaagcaataaattgctgcatatgcctactaatatatcttggcaagaataatgttgtcaacaatagt |
224 |
Q |
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| T |
21964715 |
tgaagcaataaattgctgcatatgcctactaatatttcttggcaagaataatgttgtcaacaatagt |
21964781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 58 - 224
Target Start/End: Original strand, 21987051 - 21987217
Alignment:
| Q |
58 |
gcactggagtgaattatagtgcaacttgttcatcactatgatcggtagcagttgttattaatttcaccaataaacaccacttaccgaaacacgatatcct |
157 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
21987051 |
gcactggagtgaattatactgcaacttgttcatcactatgatcagtagcagttgttattaatttcaccaataatcaccacttaccgtaacacgatatcct |
21987150 |
T |
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| Q |
158 |
tgaagcaataaattgctgcatatgcctactaatatatcttggcaagaataatgttgtcaacaatagt |
224 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
21987151 |
tgaagcaataaattgctgcatatgcctactaatatttcttggcaagaataatgttgtcaacaatagt |
21987217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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