View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1632_low_6 (Length: 557)
Name: NF1632_low_6
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1632_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 45071227 - 45070988
Alignment:
| Q |
18 |
catatgtacacaaaa-cttcctcttcaaagtagttttcgtccattataaatgttgctaggcttaaaatgattttgtcgagcacaaaacattattcttact |
116 |
Q |
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| T |
45071227 |
catatgtacacaaaaacttcctcttcaaagtagttttcgtccattataaatgttgctaggcttaaaatgattttgtcgagcacaaaacattattcttact |
45071128 |
T |
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| Q |
117 |
catgattgaagatttgaaagacaa-taagaaataaaaacacctgctagtaaaggctataacgtcctttttaatgtgttaagttcatacgcattgacaaag |
215 |
Q |
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| T |
45071127 |
catgattgaagatttgaaagacaaataagaaataaaaacacctgctaataaaggctataacgtcctttttaatgtgttaagttcatacgcattgacaaag |
45071028 |
T |
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| Q |
216 |
tggtaggtcctttaggctacatttgctgtttactaagacc |
255 |
Q |
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| T |
45071027 |
tggtaggtcctttaggctacatttgctgtttactaagacc |
45070988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 323 - 546
Target Start/End: Complemental strand, 45070921 - 45070699
Alignment:
| Q |
323 |
gctgtctagaattggaaaagcttattcatcatttaatcatacttatgtttcatatggctcttgtaattattttgaaagcattgattatcaatggatcaat |
422 |
Q |
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| T |
45070921 |
gctgtctagaattggaaaagcttattcatcatttaatcatacttatgtttcatatggctcttgtaattattttgaaagcattgattatctatggatcaat |
45070822 |
T |
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| Q |
423 |
gctctaatctagaagtgtcttactctgctactgttggactgttaatgctaagaacttgatcagaaagaacaactttcaacaaaaagtcattttcaactat |
522 |
Q |
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| T |
45070821 |
gctctaatctagaagtgtcttactctgctactgttggac-cacaatgctaagaacttgatcagaaagaacaactttcaacaaaaagtcattttcaactat |
45070723 |
T |
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| Q |
523 |
atatattgataacttgcactattt |
546 |
Q |
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| T |
45070722 |
atatattgataacttgcactattt |
45070699 |
T |
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