View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1632_low_61 (Length: 237)

Name: NF1632_low_61
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1632_low_61
NF1632_low_61
[»] chr7 (9 HSPs)
chr7 (18-237)||(39622740-39622959)
chr7 (116-237)||(39565342-39565463)
chr7 (146-237)||(39589968-39590059)
chr7 (116-237)||(39348294-39348415)
chr7 (116-235)||(39539095-39539214)
chr7 (147-237)||(39548463-39548553)
chr7 (116-237)||(39365096-39365217)
chr7 (116-237)||(39336994-39337115)
chr7 (131-237)||(39575731-39575837)


Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 39622959 - 39622740
Alignment:
Q  18 acatggagacatgtatgttattcactgatcaatatcttcatttatgtgcctctttatcacacaaattaatcacttgtctggatatctttgtgtttttctg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39622959 acatggagacatgtatgttattcactgatcaatatcttcatttatgtgcctctttatcacacaaattaatcacttgtctggatatctttgtgtttttctg 39622860  T
Q  118 aaaggttgtaccgaactcaacagaaccactaggagttcaagttttgaaatctcgtggattctttactcagtccaactggtattggataggttttggtgcc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39622859 aaaggttgtaccgaactcaacagaaccactaggagttcaagttttgaaatctcgtggattctttactcagtccaactggtattggataggttttggtgcc 39622760  T
Q  218 ttgattggatacacattact 237  Q
    ||||||||||||||||||||    
T  39622759 ttgattggatacacattact 39622740  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 116 - 237
Target Start/End: Complemental strand, 39565463 - 39565342
Alignment:
Q  116 tgaaaggttgtaccgaactcaacagaaccactaggagttcaagttttgaaatctcgtggattctttactcagtccaactggtattggataggttttggtg 215  Q
    ||||||||| | || |||||||| || || ||||||||| |||||||||||||||| |||||||| ||| ||||  ||||||| ||||||||| ||||||    
T  39565463 tgaaaggttctgcctaactcaactgagccgctaggagttgaagttttgaaatctcgcggattcttcactgagtcatactggtactggataggtgttggtg 39565364  T
Q  216 ccttgattggatacacattact 237  Q
    | ||||||||||| ||||||||    
T  39565363 ctttgattggatatacattact 39565342  T

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Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 39590059 - 39589968
Alignment:
Q  146 ctaggagttcaagttttgaaatctcgtggattctttactcagtccaactggtattggataggttttggtgccttgattggatacacattact 237  Q
    ||||||||| || ||||||||||||| || ||||||||||||||  |||||||||||||||||||||| ||  |||||||||||||||||||    
T  39590059 ctaggagttgaaattttgaaatctcgagggttctttactcagtcttactggtattggataggttttggagcaatgattggatacacattact 39589968  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 116 - 237
Target Start/End: Original strand, 39348294 - 39348415
Alignment:
Q  116 tgaaaggttgtaccgaactcaacagaaccactaggagttcaagttttgaaatctcgtggattctttactcagtccaactggtattggataggttttggtg 215  Q
    ||||||||| | || |||||||| ||| ||||||||||| ||||||||||||||||  | ||||||||| || |  | |||||||||||| || ||||||    
T  39348294 tgaaaggttcttcctaactcaaccgaatcactaggagttgaagttttgaaatctcgcagtttctttactgagacatattggtattggatatgtgttggtg 39348393  T
Q  216 ccttgattggatacacattact 237  Q
    | ||||||||||| ||||||||    
T  39348394 ctttgattggatatacattact 39348415  T

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Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 116 - 235
Target Start/End: Complemental strand, 39539214 - 39539095
Alignment:
Q  116 tgaaaggttgtaccgaactcaacagaaccactaggagttcaagttttgaaatctcgtggattctttactcagtccaactggtattggataggttttggtg 215  Q
    ||||||||| | || |||||||| |||||  |||||||| |||||||||||||||  |||||||||| | || |  ||||||| ||||||||| ||||||    
T  39539214 tgaaaggttctccctaactcaacggaaccgataggagttgaagttttgaaatctcacggattctttagtgagccatactggtactggataggtgttggtg 39539115  T
Q  216 ccttgattggatacacatta 235  Q
    | ||||||||||| ||||||    
T  39539114 ctttgattggatatacatta 39539095  T

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Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 237
Target Start/End: Complemental strand, 39548553 - 39548463
Alignment:
Q  147 taggagttcaagttttgaaatctcgtggattctttactcagtccaactggtattggataggttttggtgccttgattggatacacattact 237  Q
    |||||||| |||||||||||||||| |||| ||| ||| ||||  ||||||| ||||||||| ||||||| ||||||||||| ||||||||    
T  39548553 taggagttgaagttttgaaatctcgcggatacttcactgagtcatactggtactggataggtgttggtgctttgattggatatacattact 39548463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 237
Target Start/End: Original strand, 39365096 - 39365217
Alignment:
Q  116 tgaaaggttgtaccgaactcaacagaaccactaggagttcaagttttgaaatctcgtggattctttactcagtccaactggtattggataggttttggtg 215  Q
    ||||||||| | || |||||||| | | ||||||||||| ||||||||||||||||  | ||||||||| || |  | |||||||||||| || ||||||    
T  39365096 tgaaaggttcttcctaactcaaccggatcactaggagttgaagttttgaaatctcgcagtttctttactgagacatattggtattggatatgtgttggtg 39365195  T
Q  216 ccttgattggatacacattact 237  Q
    | ||||||||||| ||||||||    
T  39365196 ctttgattggatatacattact 39365217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 237
Target Start/End: Original strand, 39336994 - 39337115
Alignment:
Q  116 tgaaaggttgtaccgaactcaacagaaccactaggagttcaagttttgaaatctcgtggattctttactcagtccaactggtattggataggttttggtg 215  Q
    ||||||||| | || |||||||| ||| |||| |||||| ||||||||||||||||  | ||||||||| || |  | ||||| |||||| || ||||||    
T  39336994 tgaaaggttcttcctaactcaaccgaatcacttggagttgaagttttgaaatctcgcagtttctttactgagacatattggtactggatatgtgttggtg 39337093  T
Q  216 ccttgattggatacacattact 237  Q
    | ||||||||||| ||||||||    
T  39337094 ctttgattggatatacattact 39337115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 237
Target Start/End: Complemental strand, 39575837 - 39575731
Alignment:
Q  131 aactcaacagaaccactaggagttcaagttttgaaatctcgtggattctttactcagtccaactggtattggataggttttggtgccttgattggataca 230  Q
    ||||||||  |||| ||||||||| | |||||| |||||||||| |||||||| |||||  |||||||||||||| ||||||  || ||| | ||||| |    
T  39575837 aactcaactaaaccgctaggagttgatgttttggaatctcgtgggttctttacacagtcatactggtattggatatgttttgcggcattgctcggatata 39575738  T
Q  231 cattact 237  Q
    |||||||    
T  39575737 cattact 39575731  T

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