View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1632_low_62 (Length: 237)

Name: NF1632_low_62
Description: NF1632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1632_low_62
NF1632_low_62
[»] chr8 (13 HSPs)
chr8 (15-185)||(19288442-19288612)
chr8 (15-185)||(19171582-19171753)
chr8 (79-185)||(19397997-19398103)
chr8 (79-185)||(19414353-19414459)
chr8 (28-185)||(19346988-19347144)
chr8 (81-186)||(19377678-19377783)
chr8 (79-159)||(19338214-19338294)
chr8 (79-184)||(19406127-19406229)
chr8 (79-157)||(19356241-19356319)
chr8 (79-185)||(19552779-19552885)
chr8 (79-185)||(19579803-19579909)
chr8 (79-185)||(19453065-19453168)
chr8 (79-185)||(19527908-19528011)
[»] chr1 (1 HSPs)
chr1 (85-185)||(36312791-36312891)


Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 15 - 185
Target Start/End: Complemental strand, 19288612 - 19288442
Alignment:
Q  15 caaagggaatgagtttagtaaatatgtactaaactatgtttgaagtatccaagtacctttacgcgcatatttttgtttccttttgactacacataaaagg 114  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19288612 caaagggattgagtttagtaaatatgtactaaactatgtttgaagtatccaagtacctttacgcgcatatttttgtttccttttgactacacataaaagg 19288513  T
Q  115 agtgggcataatatgagtatagcagctgctattgcagcacctatcaacatccacctgtttttacctgcatt 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  19288512 agtgggcataatatgagtatagcagctgctattgcagcacctatcaatatccacctgtttttacctgcatt 19288442  T

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Target: chr8; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 19171582 - 19171753
Alignment:
Q  15 caaagggaatgagtttagtaaatat-gtactaaactatgtttgaagtatccaagtacctttacgcgcatatttttgtttccttttgactacacataaaag 113  Q
    |||||||||||||||| |||||||| |||||||||||| |||||| |||||||||||||||||| ||||||||||||||| ||||  | ||| |||||||    
T  19171582 caaagggaatgagtttcgtaaatatcgtactaaactatatttgaaatatccaagtacctttacgtgcatatttttgtttctttttcgcgacaaataaaag 19171681  T
Q  114 gagtgggcataatatgagtatagcagctgctattgcagcacctatcaacatccacctgtttttacctgcatt 185  Q
     ||||||||||||| |||||||||||||||||||||| |||| ||| | |||| | || |||||||||||||    
T  19171682 aagtgggcataataggagtatagcagctgctattgcaacaccaatccatatccgcatgcttttacctgcatt 19171753  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 79 - 185
Target Start/End: Complemental strand, 19398103 - 19397997
Alignment:
Q  79 gcatatttttgtttccttttgactacacataaaaggagtgggcataatatgagtatagcagctgctattgcagcacctatcaacatccacctgtttttac 178  Q
    |||||||||| |||| ||||| |||  |||| || |||||||||||||||||||| ||||| ||| ||||||||||||||| |  ||||||| ||| |||    
T  19398103 gcatatttttttttctttttggctagccatataatgagtgggcataatatgagtaaagcagttgcaattgcagcacctatccatttccacctttttatac 19398004  T
Q  179 ctgcatt 185  Q
    |||||||    
T  19398003 ctgcatt 19397997  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 79 - 185
Target Start/End: Complemental strand, 19414459 - 19414353
Alignment:
Q  79 gcatatttttgtttccttttgactacacataaaaggagtgggcataatatgagtatagcagctgctattgcagcacctatcaacatccacctgtttttac 178  Q
    |||||||||| |||| ||||| |||  |||| || |||||||||||||||||||| ||||| ||  ||||||||||||||| | |||||||| ||| |||    
T  19414459 gcatatttttttttctttttggctagccatataatgagtgggcataatatgagtaaagcagttgtaattgcagcacctatccatatccacctttttatac 19414360  T
Q  179 ctgcatt 185  Q
    |||||||    
T  19414359 ctgcatt 19414353  T

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Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 185
Target Start/End: Complemental strand, 19347144 - 19346988
Alignment:
Q  28 tttagtaaatatgtactaaactatgtttgaagtatccaagtacctttacgcgcatatttttgtttccttttgactacacataaaaggagtgggcataata 127  Q
    ||||||| || || |||| ||||| |||||||||||||  |||||| | | ||||||||||||||| ||||| |||  ||||||| || |||||| ||||    
T  19347144 tttagtacatttgaactagactat-tttgaagtatccatataccttgaagtgcatatttttgtttctttttggctaagcataaaatgattgggcaaaata 19347046  T
Q  128 tgagtatagcagctgctattgcagcacctatcaacatccacctgtttttacctgcatt 185  Q
    |||||| ||||||||| |||| || |  |||| | |||||| | ||||||||||||||    
T  19347045 tgagtaaagcagctgcgattgtagaagttatccatatccacttttttttacctgcatt 19346988  T

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Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 81 - 186
Target Start/End: Complemental strand, 19377783 - 19377678
Alignment:
Q  81 atatttttgtttccttttgactacacataaaaggagtgggcataatatgagtatagcagctgctattgcagcacctatcaacatccacctgtttttacct 180  Q
    ||||||||||||| ||||| |||  |||| || |||||||||||||||||||| ||||| | | |||||| |||||||| | |||||| | |||||||||    
T  19377783 atatttttgtttctttttggctagccatataatgagtgggcataatatgagtaaagcagttccgattgcaacacctatccatatccacttttttttacct 19377684  T
Q  181 gcattt 186  Q
    ||||||    
T  19377683 gcattt 19377678  T

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Target: chr8; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 79 - 159
Target Start/End: Complemental strand, 19338294 - 19338214
Alignment:
Q  79 gcatatttttgtttccttttgactacacataaaaggagtgggcataatatgagtatagcagctgctattgcagcacctatc 159  Q
    ||||||||||||||| ||||| |||   |||||| |||||||||||||||||||| ||||| ||| |||||||||||||||    
T  19338294 gcatatttttgtttctttttggctaggaataaaatgagtgggcataatatgagtaaagcagttgcgattgcagcacctatc 19338214  T

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Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 184
Target Start/End: Complemental strand, 19406229 - 19406127
Alignment:
Q  79 gcatatttttgtttccttttgactacacataaaaggagtgggcataatatgagtatagcagctgctattgcagcacctatcaacatccacctgtttttac 178  Q
    |||||||||||  || |||| ||||  ||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||| | ||||||   |||||||    
T  19406229 gcatatttttgaatcttttttactaggcataaaacgagtggacataatatgagtatagcagatgcgattgcagcacctatccatatccac---tttttac 19406133  T
Q  179 ctgcat 184  Q
    ||||||    
T  19406132 ctgcat 19406127  T

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Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 157
Target Start/End: Complemental strand, 19356319 - 19356241
Alignment:
Q  79 gcatatttttgtttccttttgactacacataaaaggagtgggcataatatgagtatagcagctgctattgcagcaccta 157  Q
    ||||||||||||||| ||||| |||  ||||||| |||||||||||||||||||| || || ||| |||||||||||||    
T  19356319 gcatatttttgtttctttttggctaggcataaaatgagtgggcataatatgagtaaagaagttgcgattgcagcaccta 19356241  T

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Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 185
Target Start/End: Original strand, 19552779 - 19552885
Alignment:
Q  79 gcatatttttgtttccttttgactacacataaaaggagtgggcataatatgagtatagcagctgctattgcagcacctatcaacatccacctgtttttac 178  Q
    |||||||||| |||| ||||| |||  |||| || |||||||||||||||||||| || || ||| |||||||||| |||| | |||||||  ||| |||    
T  19552779 gcatatttttttttctttttggctagccatataatgagtgggcataatatgagtaaagtagttgcaattgcagcacatatccatatccaccattttatac 19552878  T
Q  179 ctgcatt 185  Q
    |||||||    
T  19552879 ctgcatt 19552885  T

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Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 185
Target Start/End: Complemental strand, 19579909 - 19579803
Alignment:
Q  79 gcatatttttgtttccttttgactacacataaaaggagtgggcataatatgagtatagcagctgctattgcagcacctatcaacatccacctgtttttac 178  Q
    |||||||||| |||| ||||| |||  |||| || |||||||||||||||||||| || || ||| |||||||||| |||| | |||||||  ||| |||    
T  19579909 gcatatttttttttctttttggctagccatataatgagtgggcataatatgagtaaagtagttgcaattgcagcacatatccatatccaccattttatac 19579810  T
Q  179 ctgcatt 185  Q
    |||||||    
T  19579809 ctgcatt 19579803  T

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Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 185
Target Start/End: Complemental strand, 19453168 - 19453065
Alignment:
Q  79 gcatatttttgtttccttttgactacacataaaaggagtgggcataatatgagtatagcagctgctattgcagcacctatcaacatccacctgtttttac 178  Q
    |||||||||||  || |||| ||||  |||||||||||||| |||| |||||| | ||||| ||| ||||||||||||||| | ||||||   |||||||    
T  19453168 gcatatttttgaatcttttttactaggcataaaaggagtggacatagtatgagcagagcagatgcgattgcagcacctatccatatccac---tttttac 19453072  T
Q  179 ctgcatt 185  Q
    |||||||    
T  19453071 ctgcatt 19453065  T

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Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 185
Target Start/End: Original strand, 19527908 - 19528011
Alignment:
Q  79 gcatatttttgtttccttttgactacacataaaaggagtgggcataatatgagtatagcagctgctattgcagcacctatcaacatccacctgtttttac 178  Q
    |||||||||||  || |||| ||||  |||||||||||||| |||| |||||| | ||||| ||| ||||||||||||||| | ||||||   |||||||    
T  19527908 gcatatttttgaatcttttttactaggcataaaaggagtggacatagtatgagcagagcagatgcgattgcagcacctatccatatccac---tttttac 19528004  T
Q  179 ctgcatt 185  Q
    |||||||    
T  19528005 ctgcatt 19528011  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 185
Target Start/End: Original strand, 36312791 - 36312891
Alignment:
Q  85 ttttgtttccttttgactacacataaaaggagtgggcataatatgagtatagcagctgctattgcagcacctatcaacatccacctgtttttacctgcat 184  Q
    |||| |||| ||||| |||  ||||||| ||| ||| | |||||||||| ||||| ||| ||||||||| ||||  | ||||| || |||||||||||||    
T  36312791 ttttttttctttttggctatgcataaaatgagcgggaacaatatgagtaaagcagttgcgattgcagcagctattcatatccatctttttttacctgcat 36312890  T
Q  185 t 185  Q
    |    
T  36312891 t 36312891  T

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