View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1633-INSERTION-1 (Length: 515)
Name: NF1633-INSERTION-1
Description: NF1633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1633-INSERTION-1 |
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Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 8 - 439
Target Start/End: Original strand, 16917568 - 16918002
Alignment:
| Q |
8 |
cagacaactttgaccaacacaaaaacttgcagaaactaagtattgatagatgtcctatgcttgtggagcgactcaa---aagaaccggtgacgattggta |
104 |
Q |
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| T |
16917568 |
cagacaactttgagcaactcgaaaacttgcagaaactaagtattgatagatgtcctgggcttgagaaccgactcgactcaagaacaggtgaagattggta |
16917667 |
T |
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| Q |
105 |
taagatagctcatattccta---ttaaaccagattttgtggatccaattaacggtaatttaaagatttttctgtaatttagtaaataacttaccttttct |
201 |
Q |
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| T |
16917668 |
taagatagctcatgttcctaattttgaatcagattttgtgcatcgaattaacggtaattttaagatttttccgtaatttagtaaataagttacgtttttt |
16917767 |
T |
|
| Q |
202 |
cctaaagccagtattctcataaaattcttgatgttttctaacacattgaattgttatgtgcagaagaagagtatagcgattcagacagtgaatcggacat |
301 |
Q |
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| T |
16917768 |
actaaagccagtattctcataaaattcctgatgttttctaacacattgaattgttatgtgcagaagaagagtatagcgattcagacagtgaattggacat |
16917867 |
T |
|
| Q |
302 |
ggaggttgatgatgagccatgagtgatgaacatgtatatgattcaaatcattgcaaaatattttggatttgatttaaatcattgatggttaaatcctctc |
401 |
Q |
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| T |
16917868 |
ggaggt---tgatgagccatgagtgatgaacatgtatatgattcaaatcattgcaaaatattttggatttgatttaaatcattgatggttaaatcctatc |
16917964 |
T |
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| Q |
402 |
tcgtttgtttggagtcgtagaggattttattggattcc |
439 |
Q |
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| T |
16917965 |
tcgtttgtttggagttgtagaggattttattggattcc |
16918002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 8 - 439
Target Start/End: Original strand, 16912382 - 16912828
Alignment:
| Q |
8 |
cagacaactttgaccaacacaaaaacttgcagaaactaagtattgatagatgtcctatgcttgtggagcgactc---aaaagaaccggtgacgattggta |
104 |
Q |
| |
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|||||||||||||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| | |||||| | |||||| ||||| |||||||| |
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| T |
16912382 |
cagacaactttgaccaactcgaaaacttgcagaaactatgtattgatagatgtcctaggcttgtgaaccgactcgcaagaagaacaggtgaagattggta |
16912481 |
T |
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| Q |
105 |
taagatagctcatattcctatta---------------aaccagattttgtggatccaattaacggtaatttaaagatttttctgtaatttagtaaataa |
189 |
Q |
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| T |
16912482 |
taagatagctcatgttcctatattgagtttgagattggaatcagatgttgtgcatccaattaacggtaatttaaagattttgctataatttagtaaataa |
16912581 |
T |
|
| Q |
190 |
cttaccttttctcctaaagccagtattctcataaaattcttgatgttttctaacacattgaattgttatgtgcagaagaagagtatagcgattcagacag |
289 |
Q |
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| T |
16912582 |
gttacgttttttactaaagccagtattctcataaaattcttgatgttttctaacacattgaattgttatgtgcagaagaagagtatagcaattcagacaa |
16912681 |
T |
|
| Q |
290 |
tgaatcggacatggaggttgatgatgagccatgagtgatgaacatgtatatgattcaaatcattgcaaaatattttggatttgatttaaatcattgatgg |
389 |
Q |
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||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16912682 |
tgaattggacatggaggt---tgatgagccatgagtgatgaacatgtatatgattcaaatcattgcaaaatattttggatttgatttaaatcattgatgg |
16912778 |
T |
|
| Q |
390 |
ttaaatcctctctcgtttgtttggagtcgtagaggattttattggattcc |
439 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
16912779 |
ttaaatcctctctcgtttgtttggagttgtagaggattttattggattcc |
16912828 |
T |
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