View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1633-INSERTION-2 (Length: 508)
Name: NF1633-INSERTION-2
Description: NF1633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1633-INSERTION-2 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 8 - 508
Target Start/End: Original strand, 40170350 - 40170865
Alignment:
| Q |
8 |
tcccttgctgttccatccaagcccatggtaatgatactattataat---ttactactatcactcaatttgagtttgtgttgtgattgg---------aac |
95 |
Q |
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| T |
40170350 |
tcccttgctgctccatataagcccatggtaatgatactgttataatcatttactactattactcaatttgagtttgtgttgtgattagtgttatggcaac |
40170449 |
T |
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| Q |
96 |
gctgaatttgattagtttggttctgtttagtaatactgaacaatcttagtgattttgcttatgaataattaaagattgttcgaatcatgacgggatagtg |
195 |
Q |
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| T |
40170450 |
gctgaatttgattagtttggttctttttattaacactgagcaatcttagtgaatttgcttatgactaattaaagattgtttgaattatgattggatagtg |
40170549 |
T |
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| Q |
196 |
ttgcgtaataatgaaagtgtatcttgaaattgtgttgatgaagcacgagaatgatataacaacatgcatggtttcatttaacatata-gtgtcttcacct |
294 |
Q |
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| T |
40170550 |
ttgcgtaataatggaagtgtatcttggaattgtgttgatgaagcacgagaatgatataataacatgcatggtttaatttaacatatatgtgtgttcacc- |
40170648 |
T |
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| Q |
295 |
ttttgaggattattttatcaaaatcattaggacccaccatatatgctatgcatgtggaacttctgcaaataaagttgaacaatacaaaacaatggacaag |
394 |
Q |
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| T |
40170649 |
ttttgaggattattttatcaaaatcattaggacccaccatatattctatgcatgtggaacttttgcaaataaagttgaacaatacaaaacaatgaacaag |
40170748 |
T |
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| Q |
395 |
tgtttggttttaagtgggaaagtatacaatgag-tttaattgatatgcattattggtgtaaaaaagttttacacatgcattcgattacattttat--cgc |
491 |
Q |
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| T |
40170749 |
tgtttggttttaagtgggaaagtatataatgagttttaattgatatgcattatcggcctataaaagttttacacatgcattcagtcacattttatcgcgc |
40170848 |
T |
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| Q |
492 |
tcagatatttgaggaga |
508 |
Q |
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| T |
40170849 |
tcagatatttgaggaga |
40170865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 425 - 473
Target Start/End: Complemental strand, 36480121 - 36480073
Alignment:
| Q |
425 |
gagtttaattgatatgcattattggtgtaaaaaagttttacacatgcat |
473 |
Q |
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| T |
36480121 |
gagtttaattgatatgcattgtcggtgtaaacaagttttacacatgcat |
36480073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 424 - 473
Target Start/End: Complemental strand, 8279625 - 8279576
Alignment:
| Q |
424 |
tgagtttaattgatatgcattattggtgtaaaaaagttttacacatgcat |
473 |
Q |
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| T |
8279625 |
tgagtttaattcatatacactgttggtgtaaaaaagttttacacatgcat |
8279576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 473
Target Start/End: Complemental strand, 20996421 - 20996368
Alignment:
| Q |
420 |
acaatgagtttaattgatatgcattattggtgtaaaaaagttttacacatgcat |
473 |
Q |
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| T |
20996421 |
acaatgagtttaattgatatgcatattaagtgtaaaaaagttttatacaagcat |
20996368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 478
Target Start/End: Original strand, 18637438 - 18637491
Alignment:
| Q |
425 |
gagtttaattgatatgcattattggtgtaaaaaagttttacacatgcattcgat |
478 |
Q |
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| T |
18637438 |
gagtttaattgatatgcattgtcagtgtaaagaagttttacatatgcatacgat |
18637491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 473
Target Start/End: Original strand, 28479117 - 28479165
Alignment:
| Q |
425 |
gagtttaattgatatgcattattggtgtaaaaaagttttacacatgcat |
473 |
Q |
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| T |
28479117 |
gagtttaattgatattcaccgtcggtgtaaaaaagttttacacatgcat |
28479165 |
T |
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