View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1633-INSERTION-3 (Length: 502)

Name: NF1633-INSERTION-3
Description: NF1633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1633-INSERTION-3
NF1633-INSERTION-3
[»] chr8 (2 HSPs)
chr8 (7-490)||(32119524-32120007)
chr8 (335-434)||(26572608-26572707)
[»] chr5 (9 HSPs)
chr5 (101-220)||(14373359-14373475)
chr5 (110-220)||(14239882-14239989)
chr5 (110-220)||(41450939-41451046)
chr5 (110-220)||(41437715-41437822)
chr5 (21-99)||(14239735-14239815)
chr5 (440-488)||(38278953-38279001)
chr5 (14-99)||(41437559-41437646)
chr5 (14-99)||(41450785-41450872)
chr5 (456-490)||(38276852-38276886)
[»] chr3 (1 HSPs)
chr3 (117-214)||(22749918-22750012)


Alignment Details
Target: chr8 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 7 - 490
Target Start/End: Original strand, 32119524 - 32120007
Alignment:
Q  7 agtttttcaccaagaagttccataaaatcggttccaat--tgagaagatccgcatactttccactttgagtaacttttccatgcttcatgacctacagaa 104  Q
    |||||||||||||||||||||||||||| |||||||||  |||||||||| ||||||||||||||  |||||| ||||||||  ||||||||||||||||    
T  32119524 agtttttcaccaagaagttccataaaattggttccaatgttgagaagatcggcatactttccact--gagtaatttttccatctttcatgacctacagaa 32119621  T
Q  105 taacaataaatactcaccaatataaggttagcagcagtaggtaagaactcaacttgatgaataacataaacaactgtttttgaacttaaaacactcagca 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32119622 taacaataaatactcaccaatataaggttagcagcagtaggtaagaacttcacttgatgaataacataaacaactgtttttgaacttaaaacactcagca 32119721  T
Q  205 agcattcctgccacacttataaatctaaagatagactgccatatgagacagttgtttgattgagaacaataggttgggaaatctcaaattggtaactatt 304  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32119722 agcattcctgccacacttataaatctaaagatagacttccatatgagacagttgtttgattgagaacaataggttgggaaatcgcaaattggtaactatt 32119821  T
Q  305 tgttgtacatggttcctccaataatggttgggaaatggtctttgcaggttccttgcaaaatgatacctagccaactcagtctcatatggttcctctaatg 404  Q
     | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32119822 agctgtacatggttcctccaatgatggttgggaaatggtctttgcaggttccttgcaaaatgatacctagccaactcagtctcatatggttcctctaatg 32119921  T
Q  405 aaagataactttaggtctcatattgcttatgattgtatccatgtctctctttcactatttctttttattttgtcatgtatctttaa 490  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32119922 aaagataactttaggtctcaaattgcttatgattgtatccatgtctctctttcactatttctttttattttgtcatgtatctttaa 32120007  T

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Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 335 - 434
Target Start/End: Original strand, 26572608 - 26572707
Alignment:
Q  335 ggaaatggtctttgcaggttccttgcaaaatgatacctagccaactcagtctcatatggttcctctaatgaaagataactttaggtctcatattgcttat 434  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||||| || |||| |||||||||||||||| |||||||||| |||||||||    
T  26572608 ggaaatggtctttgcaggttccttgcaaattaatacctagccaactcagtctcacattgttcatctaatgaaagataacattaggtctcaaattgcttat 26572707  T

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Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 101 - 220
Target Start/End: Complemental strand, 14373475 - 14373359
Alignment:
Q  101 agaataacaataaatactcaccaatataaggttagcagcagtaggtaagaactcaacttgatgaataacataaacaactgtttttgaacttaaaacactc 200  Q
    ||||||||||||||||||||||||||||||||   ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||    
T  14373475 agaataacaataaatactcaccaatataaggt---cagcagtaggtaagaactccacttgatgagtaacataaacaactgtttttgaacttagaacactc 14373379  T
Q  201 agcaagcattcctgccacac 220  Q
    ||||||||||||||||||||    
T  14373378 agcaagcattcctgccacac 14373359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 110 - 220
Target Start/End: Original strand, 14239882 - 14239989
Alignment:
Q  110 ataaatactcaccaatataaggttagcagcagtaggtaagaactcaacttgatgaataacataaacaactgtttttgaacttaaaacactcagcaagcat 209  Q
    |||||||||||||||||||||||   ||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||| ||||||||||    
T  14239882 ataaatactcaccaatataaggt---cagcagtaggtaagaactccacttgatgagtaacataaacaactgtttttgagcttaaaacacccagcaagcat 14239978  T
Q  210 tcctgccacac 220  Q
    |||||| ||||    
T  14239979 tcctgcaacac 14239989  T

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Target: chr5; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 110 - 220
Target Start/End: Original strand, 41450939 - 41451046
Alignment:
Q  110 ataaatactcaccaatataaggttagcagcagtaggtaagaactcaacttgatgaataacataaacaactgtttttgaacttaaaacactcagcaagcat 209  Q
    |||||||||||||||||||||||   ||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||  |||||||||    
T  41450939 ataaatactcaccaatataaggt---cagcagtaggtaagaactccacttgatgagtaacataaacaactgtttttgagcttaaaacaccgagcaagcat 41451035  T
Q  210 tcctgccacac 220  Q
    |||||||||||    
T  41451036 tcctgccacac 41451046  T

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Target: chr5; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 110 - 220
Target Start/End: Original strand, 41437715 - 41437822
Alignment:
Q  110 ataaatactcaccaatataaggttagcagcagtaggtaagaactcaacttgatgaataacataaacaactgtttttgaacttaaaacactcagcaagcat 209  Q
    ||||||||||||| |||||||||   ||||||||||||||||||| ||||| ||| |||||||||||||||||||||| |||||||||| ||||||||||    
T  41437715 ataaatactcaccgatataaggt---cagcagtaggtaagaactccacttggtgagtaacataaacaactgtttttgagcttaaaacacccagcaagcat 41437811  T
Q  210 tcctgccacac 220  Q
    |||||||||||    
T  41437812 tcctgccacac 41437822  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 14239735 - 14239815
Alignment:
Q  21 aagttccataaaatcggttccaat--tgagaagatccgcatactttccactttgagtaacttttccatgcttcatgaccta 99  Q
    ||||||||||||||| || |||||  | || ||||| |||||||||||||||||||||| ||||||||  |||||||||||    
T  14239735 aagttccataaaatcagtcccaatgttaagcagatcagcatactttccactttgagtaatttttccatctttcatgaccta 14239815  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 488
Target Start/End: Original strand, 38278953 - 38279001
Alignment:
Q  440 tatccatgtctctctttcactatttctttttattttgtcatgtatcttt 488  Q
    |||| ||||||||| || |||||||||||||||||| ||||||||||||    
T  38278953 tatcaatgtctctcctttactatttctttttattttatcatgtatcttt 38279001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 41437559 - 41437646
Alignment:
Q  14 caccaagaagttccataaaatcggttccaat--tgagaagatccgcatactttccactttgagtaacttttccatgcttcatgaccta 99  Q
    |||||| ||||||||||||||| || |||||  | || ||||| |||||||||||||||||||||| ||| || |  |||||||||||    
T  41437559 caccaacaagttccataaaatcagtcccaatgttaagcagatcggcatactttccactttgagtaattttcccgtctttcatgaccta 41437646  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 41450785 - 41450872
Alignment:
Q  14 caccaagaagttccataaaatcggttccaat--tgagaagatccgcatactttccactttgagtaacttttccatgcttcatgaccta 99  Q
    |||||| |||||||||||| || || |||||  | || ||||| |||||||||||||||||||||||||| || |  |||||||||||    
T  41450785 caccaacaagttccataaagtcagtcccaatgttaagcagatcggcatactttccactttgagtaactttcccgtctttcatgaccta 41450872  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 456 - 490
Target Start/End: Original strand, 38276852 - 38276886
Alignment:
Q  456 tcactatttctttttattttgtcatgtatctttaa 490  Q
    ||||||||||||||||||||||||||||| |||||    
T  38276852 tcactatttctttttattttgtcatgtatatttaa 38276886  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 214
Target Start/End: Original strand, 22749918 - 22750012
Alignment:
Q  117 ctcaccaatataaggttagcagcagtaggtaagaactcaacttgatgaataacataaacaactgtttttgaacttaaaacactcagcaagcattcctg 214  Q
    |||||||| ||||||| ||||||||   |||||||||| ||||||||  | ||||| |  ||||| |||||||||||||   ||||||||||||||||    
T  22749918 ctcaccaagataaggtcagcagcag---gtaagaactctacttgatgtgtgacatagatcactgtctttgaacttaaaagtttcagcaagcattcctg 22750012  T

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